Pre_GI: BLASTP Hits

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Query: NC_006511:2677964:2691309 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC

Start: 2691309, End: 2691893, Length: 585

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar has a narrow host range and causes a typhoid-like (paratyphoid fever) illness in humans. It is especially prevalent in southern and eastern Asia, and has been associated with some particularly virulent outbreaks. A number of isolates are increasingly antibiotic resistant. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011147:2676972:268684526868452687429585Salmonella enterica subsp. enterica serovar Paratyphi A strexonuclease7e-113405
NC_003198:4453457:450308645030864503670585Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative exonuclease7e-113405
NC_020260:312805:321527321527322111585Cronobacter sakazakii Sp291, complete genomeputative exonuclease CP812e-81301
NC_016845:4046142:405387740538774054458582Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative exonuclease CP813e-80297
NC_006155:2208686:221214522121452212798654Yersinia pseudotuberculosis IP 32953, complete genomesimilar to Orf81 bacteriophage 1863e-47187
NC_010634:2124185:212841221284122129065654Yersinia pseudotuberculosis PB1/+, complete genomeexonuclease RNase T and DNA polymerase III4e-46184
NC_011667:1:469146915296606Thauera sp. MZ1T plasmid pTha01, complete sequenceExonuclease RNase T and DNA polymerase III3e-42171
NC_007645:6858465:687346568734656874034570Hahella chejuensis KCTC 2396, complete genomeputative exonuclease2e-30132
NC_009837:92000:109015109015109878864Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequenceYacC6e-29127
NC_017506:2089769:210113921011392101711573Marinobacter adhaerens HP15 chromosome, complete genomeexonuclease RNase T and DNA polymerase III5e-29127
NC_013508:3188978:322647132264713227070600Edwardsiella tarda EIB202, complete genomeOrf81 bacteriophage 1866e-28123
NC_019757:5852000:586552858655285866355828Cylindrospermum stagnale PCC 7417, complete genomeDNA polymerase III epsilon subunit-like 3'-5' exonuclease1e-21103
NC_004431:1166568:116782311678231168386564Escherichia coli CFT073, complete genomehypothetical protein4e-1891.3
NC_017167:1648913:178021217802121781027816Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1DNA polymerase III subunit epsilon1e-1066.2
NC_014837:2354241:236160723616072362275669Pantoea sp. At-9b chromosome, complete genomeDNA polymerase III subunit epsilon1e-1065.9
NC_013205:1123280:115256811525681153290723Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,DNA polymerase III, epsilon subunit3e-1065.1
NC_013205:526281:554529554529555251723Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,DNA polymerase III, epsilon subunit6e-1063.9
NC_013205:1548500:155584215558421556564723Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,DNA polymerase III, epsilon subunit1e-0963.2
NC_016816:1970189:198306319830631983731669Pantoea ananatis LMG 5342, complete genomeexodeoxyribonuclease X1e-0962.8
NC_017167:2298962:235386823538682354572705Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1DNA polymerase III subunit epsilon1e-0962.8
NC_013850:1887556:189040318904031891062660Klebsiella variicola At-22 chromosome, complete genomeExonuclease RNase T and DNA polymerase III2e-0962
NC_020419:1037899:105155110515511052147597Uncultured Termite group 1 bacterium phylotype Rs-D17 DNA, completeDNA polymerase III epsilon subunit2e-0962
NS_000191:1037899:105155110515511052147597Uncultured Termite group 1 bacterium phylotype Rs-D17, completeDNA polymerase III epsilon subunit2e-0962
NC_011294:1220526:122261412226141223312699Salmonella enterica subsp. enterica serovar Enteritidis strexodeoxyribonuclease X3e-0961.6
NC_002939:1505701:151169815116981512243546Geobacter sulfurreducens PCA, complete genomeexonuclease4e-0961.2
NC_007384:1355060:138151613815161382178663Shigella sonnei Ss046, complete genomehypothetical protein3e-0961.2
NC_016822:1339058:136436513643651365027663Shigella sonnei 53G, complete genomeexodeoxyribonuclease X3e-0961.2
NC_011094:1923870:194963319496331950331699Salmonella enterica subsp. enterica serovar Schwarzengrund strexodeoxyribonuclease X5e-0960.8
NC_003197:1945858:197107219710721971770699Salmonella typhimurium LT2, complete genomeexodeoxyribonuclease X5e-0960.8
NC_012125:1897611:189969718996971900395699Salmonella enterica subsp. enterica serovar Paratyphi C strainexodeoxyribonuclease X5e-0960.8
NC_016810:1903426:192864019286401929338699Salmonella enterica subsp. enterica serovar Typhimurium strexodeoxyribonuclease X5e-0960.8
NC_016856:1957263:198247719824771983175699Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sexodeoxyribonuclease X5e-0960.8
NC_016857:1903426:192864019286401929338699Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74exodeoxyribonuclease X5e-0960.8
NC_016860:1943203:196661319666131967311699Salmonella enterica subsp. enterica serovar Typhimurium strexodeoxyribonuclease X5e-0960.8
NC_016863:1905454:193066819306681931366699Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1exodeoxyribonuclease X5e-0960.8
NC_017046:1902788:192800319280031928701699Salmonella enterica subsp. enterica serovar Typhimurium str. 798exodeoxyribonuclease X5e-0960.8
NC_010102:1137247:113933511393351140033699Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein5e-0960.8
NC_011205:1345511:134759913475991348297699Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853exodeoxyribonuclease X5e-0960.8
NC_011080:1944226:197669319766931977391699Salmonella enterica subsp. enterica serovar Newport str. SL254,exodeoxyribonuclease 105e-0960.8
NC_013037:6209424:621973662197366220260525Dyadobacter fermentans DSM 18053, complete genomeDNA polymerase III, epsilon subunit1e-0859.7
NC_021066:2226826:224604422460442246703660Raoultella ornithinolytica B6, complete genomeexodeoxyribonuclease X2e-0858.9
NC_008258:1873805:189061318906131891275663Shigella flexneri 5 str. 8401, complete genomehypothetical protein2e-0858.5
NC_015572:2186394:2188322218832221897221401Methylomonas methanica MC09 chromosome, complete genomeDNA polymerase III subunit epsilon5e-0857.4
NC_014960:1697818:1714903171490317177072805Anaerolinea thermophila UNI-1, complete genomeDnaQ exonuclease/DinG helicase family protein7e-0857
NC_011147:1057259:105934710593471060045699Salmonella enterica subsp. enterica serovar Paratyphi A strexodeoxyribonuclease X9e-0856.6
NC_006511:1063249:106533710653371066035699Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCexodeoxyribonuclease X9e-0856.6
NC_009901:2915939:293148329314832932211729Shewanella pealeana ATCC 700345, complete genomeDNA polymerase III, epsilon subunit1e-0755.8
NC_015566:2039431:204149820414982042166669Serratia sp. AS12 chromosome, complete genomeExonuclease RNase T and DNA polymerase III2e-0755.5
NC_015567:2039443:204151020415102042178669Serratia sp. AS9 chromosome, complete genomeExonuclease RNase T and DNA polymerase III2e-0755.5
NC_014727:2036340:205057920505792051475897Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,DNA polymerase iii polc-type3e-0755.1
NC_020453:896458:9170169170169191782163Agromonas oligotrophica S58 DNA, complete genomehypothetical protein3e-0754.7
NC_016816:2073677:207573320757332076404672Pantoea ananatis LMG 5342, complete genomeexodeoxyribonuclease X4e-0754.3
NC_009253:2139379:2156194215619421604744281Desulfotomaculum reducens MI-1 chromosome, complete genomeDNA polymerase III subunit alpha8e-0753.5
NC_007517:3430237:345016934501693450825657Geobacter metallireducens GS-15, complete genomeDNA polymerase III, epsilon subunit8e-0753.5
NC_015381:1318818:133573613357361336347612Burkholderia gladioli BSR3 chromosome 1, complete sequenceDNA polymerase III subunit epsilon1e-0653.1
NC_009664:3718927:3738654373865437404591806Kineococcus radiotolerans SRS30216, complete genomeDNA polymerase III, epsilon subunit2e-0652.8
NC_013169:1661135:1661135166113516628891755Kytococcus sedentarius DSM 20547, complete genomeexonuclease, DNA polymerase III, epsilon subunit family1e-0652.8
NC_015554:4724245:4724245472424547263772133Alteromonas sp. SN2 chromosome, complete genomeDNA polymerase III, epsilon subunit2e-0652.4
NC_015957:3282183:3285931328593132878471917Streptomyces violaceusniger Tu 4113 chromosome, complete genomeDNA polymerase III subunit epsilon2e-0652
NC_014363:2035141:4254425472593006Olsenella uli DSM 7084 chromosome, complete genomeDNA polymerase III, epsilon subunit2e-0652
NC_012471:781063:7810637810637835342472Streptococcus equi subsp. equi 4047, complete genomeATP-dependent DNA helicase3e-0651.6
NC_007484:667879:682483682483683100618Nitrosococcus oceani ATCC 19707, complete genomeExonuclease4e-0651.2
NC_008313:2685531:268771026877102688450741Ralstonia eutropha H16 chromosome 1, complete sequenceDNA polymerase III epsilon subunit7e-0650.4
NC_014311:1545175:154795115479511548679729Ralstonia solanacearum PSI07 chromosome, complete genomeDNA polymerase III epsilon subunit9e-0650.1