Pre_GI: BLASTP Hits

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Query: NC_006511:2677964:2680460 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC

Start: 2680460, End: 2681293, Length: 834

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar has a narrow host range and causes a typhoid-like (paratyphoid fever) illness in humans. It is especially prevalent in southern and eastern Asia, and has been associated with some particularly virulent outbreaks. A number of isolates are increasingly antibiotic resistant. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003198:4453457:449222544922254493058834Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative capsid protein2e-161568
NC_017046:2869873:287218728721872873020834Salmonella enterica subsp. enterica serovar Typhimurium str. 798capsid protein2e-159561
NC_016857:2871689:287344528734452874278834Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative capsid protein2e-159561
NC_016810:2871689:287344528734452874278834Salmonella enterica subsp. enterica serovar Typhimurium strputative capsid protein2e-159561
NC_011205:2938356:294064529406452941478834Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853phage capsid scaffolding protein4e-136483
NC_007613:761234:775348775348776181834Shigella boydii Sb227, complete genomeputative capsid scaffolding protein7e-136483
NC_011149:2802199:280540128054012806234834Salmonella enterica subsp. enterica serovar Agona str. SL483,phage capsid scaffolding protein1e-134479
NC_016845:1773416:178768417876841788517834Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,Presumed capsid scaffolding protein (GpO)7e-135479
NC_014306:1244721:125997012599701260824855Erwinia billingiae Eb661, complete genomecapsid scaffolding protein1e-127456
NC_014837:3766426:377019137701913771024834Pantoea sp. At-9b chromosome, complete genomecapsid scaffolding4e-122437
NC_012947:2898179:289874428987442899496753Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completecapsid scaffolding2e-120432
NC_013956:3525711:352816235281623529124963Pantoea ananatis LMG 20103 chromosome, complete genomeO1e-94346
NC_010694:614985:639310639310640173864Erwinia tasmaniensis, complete genomePutative capsid scaffolding protein2e-93342
NC_020260:312805:331321331321332148828Cronobacter sakazakii Sp291, complete genomecapsid scaffold-like protein5e-85314
NC_017047:4037674:405581740558174056668852Rahnella aquatilis HX2 chromosome, complete genomecapsid scaffolding protein7e-74277
NC_015061:596247:623225623225624076852Rahnella sp. Y9602 chromosome, complete genomecapsid scaffolding2e-72271
NC_015061:1598920:161885616188561619707852Rahnella sp. Y9602 chromosome, complete genomecapsid scaffolding2e-70265
NC_012962:4942000:495355249535524954388837Photorhabdus asymbiotica, complete genomeputative capsid scaffolding protein4e-67254
NC_012917:3565268:358854235885423589396855Pectobacterium carotovorum subsp. carotovorum PC1, complete genomecapsid scaffolding9e-64243
NC_016818:1605918:162268916226891623534846Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completePhage capsid scaffolding protein (GPO) serine peptidase9e-62237
NC_017047:1551836:156944015694401570285846Rahnella aquatilis HX2 chromosome, complete genomecapsid scaffolding protein6e-62237
NC_014306:103545:121387121387122223837Erwinia billingiae Eb661, complete genomePutative phage capsid scaffolding protein1e-60233
NC_003295:2111730:211173021117302112569840Ralstonia solanacearum GMI1000, complete genomePROBABLE BACTERIOPHAGE PROTEIN3e-59228
NC_015856:1152021:116838711683871169373987Collimonas fungivorans Ter331 chromosome, complete genomeputative bacteriophage protein1e-56219
NC_013008:2824511:282451128245112825365855Escherichia coli O157:H7 str. TW14359 chromosome, complete genomephage capsid scaffolding protein GpO5e-56218
NC_011353:2825500:282553128255312826385855Escherichia coli O157:H7 str. EC4115 chromosome, complete genomephage capsid scaffolding protein GpO5e-56218
NC_020181:5182568:518371251837125184566855Enterobacter aerogenes EA1509E, complete genomePhage capsid scaffolding protein3e-55215
NC_012724:147454:150329150329151141813Burkholderia glumae BGR1 chromosome 1, complete genomePhage capsid scaffolding protein (GPO)3e-55215
NC_008800:1870596:187241418724141873268855Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative phage capsid scaffolding protein7e-55214
NC_020211:4598217:460162646016264602441816Serratia marcescens WW4, complete genomephage capsid scaffolding protein GpO2e-54212
NC_016845:4046142:406473640647364065590855Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative prophage capsid scaffolding protein1e-53209
NC_009648:3803622:382293638229363823790855Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative prophage capsid scaffolding protein3e-53208
NC_007963:1582089:158574715857471586562816Chromohalobacter salexigens DSM 3043, complete genomephage capsid scaffolding7e-51200
NC_014323:992978:994790994790995632843Herbaspirillum seropedicae SmR1 chromosome, complete genomephage-related capsid scaffold bacteriophage protein2e-50199
NC_003902:3514000:353195935319593532801843Xanthomonas campestris pv. campestris str. ATCC 33913, completephage-related capsid scaffold protein4e-49194
NC_020209:3262000:327625932762593277137879Pseudomonas poae RE*1-1-14, complete genomeputative capsid scafolding protein6e-47187
NC_010943:325739:326789326789327652864Stenotrophomonas maltophilia K279a, complete genomepresumed capsid scaffolding protein (gpo)1e-46187
NC_012660:1737423:174070417407041741582879Pseudomonas fluorescens SBW25 chromosome, complete genomeputative capsid scafolding protein1e-44180
NC_013282:3389619:339300833930083393754747Cronobacter turicensis, complete genomePresumed capsid-scaffolding protein4e-44178
NC_012724:1892000:190577019057701906642873Burkholderia glumae BGR1 chromosome 1, complete genomePhage capsid scaffolding protein3e-39162
NC_017059:3688688:369059536905953691395801Rhodospirillum photometricum DSM 122, complete genomePhage-related capsid scaffolding protein (GPO-like)3e-31135
NC_008751:3214000:321582532158253216673849Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomephage capsid scaffolding9e-23107
NC_008751:1762562:176433317643331765193861Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomephage capsid scaffolding1e-22107
NC_009348:4135002:413857741385774139449873Aeromonas salmonicida subsp. salmonicida A449, complete genomephage capsid scaffolding protein1e-22107
NC_011883:269497:288701288701289531831Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,capsid scaffolding3e-22105
NC_008750:3314309:332613733261373327057921Shewanella sp. W3-18-1, complete genomephage capsid scaffolding7e-22104
NC_015224:3291736:330998633099863310507522Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,Phage capsid scaffolding6e-2098.2
NC_014500:894136:929517929517930359843Dickeya dadantii 3937 chromosome, complete genomeputative capsid scaffolding protein2e-1892.8
NC_013592:804288:830223830223831059837Dickeya dadantii Ech586, complete genomecapsid scaffolding2e-1892.8
NC_013892:992811:998643998643999482840Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein2e-1789.7
NC_009656:5185704:5201873520187352030181146Pseudomonas aeruginosa PA7 chromosome, complete genomescaffold2e-1479.7
NC_012125:894955:929828929828930631804Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein4e-1479
NC_015061:2770856:277085627708562771695840Rahnella sp. Y9602 chromosome, complete genomecapsid scaffolding2e-1272.8