Pre_GI: BLASTP Hits

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Query: NC_006511:2677964:2678167 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC

Start: 2678167, End: 2678631, Length: 465

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar has a narrow host range and causes a typhoid-like (paratyphoid fever) illness in humans. It is especially prevalent in southern and eastern Asia, and has been associated with some particularly virulent outbreaks. A number of isolates are increasingly antibiotic resistant. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003198:4453457:44737534473753450773033978Salmonella enterica subsp. enterica serovar Typhi str. CT18,7e-88322
NC_003198:4453457:448993244899324490396465Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative capsid completion protein2e-87320
NC_017046:2869873:286987328698732870400528Salmonella enterica subsp. enterica serovar Typhimurium str. 798capsid completion protein4e-87319
NC_010694:614985:642066642066642593528Erwinia tasmaniensis, complete genomePutative capsid completion protein3e-83306
NC_011149:2802199:280311128031112803575465Salmonella enterica subsp. enterica serovar Agona str. SL483,phage head completion protein5e-80295
NC_016845:1773416:179034217903421790806465Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,Head completion/stabilization protein (GpL)9e-80295
NC_011205:2938356:293835629383562938820465Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853phage head completion protein2e-79294
NC_007613:761234:778006778006778470465Shigella boydii Sb227, complete genomeputative capsid completion protein4e-79292
NC_014837:3766426:376786637678663768330465Pantoea sp. At-9b chromosome, complete genomehead completion protein4e-61233
NC_014562:2871765:287347528734752873939465Pantoea vagans C9-1 chromosome, complete genomeHead completion/stabilization protein (GpL)2e-59227
NC_014306:1244721:126265712626571263127471Erwinia billingiae Eb661, complete genomecapsid completion protein3e-58223
NC_013956:3525711:352571135257113526196486Pantoea ananatis LMG 20103 chromosome, complete genomeL1e-55214
NC_020260:312805:334068334068334535468Cronobacter sakazakii Sp291, complete genomecapsid completion protein9e-50195
NC_020211:4598217:459912845991284599616489Serratia marcescens WW4, complete genomephage head completion protein GpL2e-32137
NC_014228:3022903:304245930424593042923465Xenorhabdus nematophila ATCC 19061, complete genomeHead completion/stabilization protein (GpL)4e-31133
NC_016514:2334870:233487023348702335376507Enterobacter cloacae EcWSU1 chromosome, complete genomehead Completion protein8e-31132
NC_015061:1598920:162158416215841622054471Rahnella sp. Y9602 chromosome, complete genomehead completion protein5e-30129
NC_013282:3389619:339052733905273391021495Cronobacter turicensis, complete genomeHead completion/stabilization protein5e-30129
NC_009648:3803622:382045438204543820960507Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative prophage phage head completion protein4e-29127
NC_015856:1152021:117125811712581171749492Collimonas fungivorans Ter331 chromosome, complete genomephage head completion2e-28124
NC_017047:1551836:157227515722751572769495Rahnella aquatilis HX2 chromosome, complete genomehead completion protein3e-27120
NC_012962:4942000:495121549512154951679465Photorhabdus asymbiotica, complete genomeputative capsid completion protein8e-27119
NC_017047:4037674:405854540585454059018474Rahnella aquatilis HX2 chromosome, complete genomehead completion protein9e-27119
NC_016818:1605918:162552616255261626020495Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completePhage head completion protein (GPL)3e-26117
NC_003902:3514000:353468835346883535155468Xanthomonas campestris pv. campestris str. ATCC 33913, completephage-related capsid completion protein4e-25113
NC_012724:147454:148018148018148497480Burkholderia glumae BGR1 chromosome 1, complete genomeFels-2 prophage protein3e-24110
NC_007963:1582089:158345215834521583922471Chromohalobacter salexigens DSM 3043, complete genomephage head completion4e-23107
NC_020209:3262000:327931332793133279774462Pseudomonas poae RE*1-1-14, complete genomephage head completion protein (GPL)2e-21101
NC_014306:103545:124398124398124892495Erwinia billingiae Eb661, complete genomePhage head completion/stabilization protein8e-2095.9
NC_012724:1892000:190853019085301909030501Burkholderia glumae BGR1 chromosome 1, complete genomePhage head completion8e-1785.9
NC_017059:3688688:369313836931383693632495Rhodospirillum photometricum DSM 122, complete genomeHead completion protein1e-1375.5
NC_013592:804288:832887832887833399513Dickeya dadantii Ech586, complete genomehead completion protein3e-0960.5
NC_014500:894136:932196932196932699504Dickeya dadantii 3937 chromosome, complete genomeputative head completion/stabilization protein4e-0960.5
NC_013892:992811:100135410013541001806453Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein7e-0959.7
NC_012125:894955:932481932481932969489Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein3e-0857.8
NC_009656:5185704:520487252048725205333462Pseudomonas aeruginosa PA7 chromosome, complete genomephage head completion protein3e-0754.3