Pre_GI: BLASTP Hits

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Query: NC_006511:1770000:1782168 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC

Start: 1782168, End: 1783049, Length: 882

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar has a narrow host range and causes a typhoid-like (paratyphoid fever) illness in humans. It is especially prevalent in southern and eastern Asia, and has been associated with some particularly virulent outbreaks. A number of isolates are increasingly antibiotic resistant. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011147:1763681:177735117773511778232882Salmonella enterica subsp. enterica serovar Paratyphi A strtranscriptional regulator5e-172603
NC_011083:1216500:122000412200041220885882Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,transcriptional regulator, RpiR family2e-171601
NC_010102:1979742:199189419918941992775882Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-171601
NC_003198:1117687:112536611253661126247882Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative transcriptional regulator2e-171601
NC_011080:1209935:121761412176141218495882Salmonella enterica subsp. enterica serovar Newport str. SL254,transcriptional regulator, RpiR family2e-171601
NC_006905:1186895:119457411945741195455882Salmonella enterica subsp. enterica serovar Choleraesuis strputative transcriptional regulator2e-171601
NC_004631:1842050:185456618545661855447882Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative transcriptional regulator2e-171601
NC_011205:1186097:119377511937751194656882Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853RpiR family transcriptional regulator2e-171601
NC_011274:1094379:110205811020581102939882Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91transcriptional regulator2e-171601
NC_011294:1085447:109314410931441094025882Salmonella enterica subsp. enterica serovar Enteritidis strtranscriptional regulator2e-171601
NC_012125:2646792:265912026591202660001882Salmonella enterica subsp. enterica serovar Paratyphi C straintranscriptional regulator2e-171601
NC_016831:1905289:192213519221351923016882Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative transcriptional regulator2e-171601
NC_016832:1838220:185141618514161852297882Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,RpiR-family transcriptional regulator2e-171601
NC_003197:1207597:121527512152751216156882Salmonella typhimurium LT2, complete genomeputative transcriptional regulator4e-171600
NC_011094:1166271:117395011739501174831882Salmonella enterica subsp. enterica serovar Schwarzengrund strtranscriptional regulator, RpiR family protein4e-171600
NC_016810:1163919:117159811715981172479882Salmonella enterica subsp. enterica serovar Typhimurium strputative transcriptional regulator4e-171600
NC_016856:1165941:117362011736201174501882Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative transcriptional regulator4e-171600
NC_016860:1205282:121296112129611213842882Salmonella enterica subsp. enterica serovar Typhimurium strputative transcriptional regulator4e-171600
NC_016863:1165232:117291111729111173792882Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative transcriptional regulator4e-171600
NC_016857:1163919:117159811715981172512915Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative transcriptional regulator3e-171600
NC_010067:1782998:179623817962381797119882Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-164578
NC_017046:1164176:117185511718551172679825Salmonella enterica subsp. enterica serovar Typhimurium str. 798transcriptional regulator7e-159559
NC_020418:1397112:141023714102371411124888Morganella morganii subsp. morganii KT, complete genomeSialic acid utilization regulator, RpiR family6e-120430
NC_009708:1497898:151619215161921517070879Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeRpiR family transcriptional regulator3e-108391
NC_014377:321949:336280336280337122843Thermosediminibacter oceani DSM 16646 chromosome, complete genometranscriptional regulator, RpiR family4e-40165
NC_014410:2329838:234588623458862346728843Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,transcriptional regulator, RpiR family1e-37156
NC_011661:1807101:181101118110111811856846Dictyoglomus turgidum DSM 6724, complete genometranscriptional regulator, RpiR family1e-35150
NC_013515:1125739:113914011391401139958819Streptobacillus moniliformis DSM 12112, complete genometranscriptional regulator, RpiR family7e-33141
NC_008314:1202963:120453312045331205366834Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator1e-32140
NC_008358:2574343:257961025796102580443834Hyphomonas neptunium ATCC 15444, complete genometranscriptional regulator, RpiR family4e-32138
NC_012668:1688500:172144717214471722277831Vibrio cholerae MJ-1236 chromosome 1, complete sequencesialic acid utilization regulator RpiR family1e-28127
NC_017270:1755552:176398117639811764817837Vibrio cholerae LMA3984-4 chromosome chromosome I, completeSialic acid utilization regulator, RpiR family7e-29127
NC_012578:1838470:187236418723641873200837Vibrio cholerae M66-2 chromosome I, complete sequencePutative HTH-type transcriptional regulator ybbH1e-28126
NC_009457:1444449:147833414783341479170837Vibrio cholerae O395 chromosome 2, complete sequencehypothetical protein1e-28126
NC_014219:192555:206560206560207414855Bacillus selenitireducens MLS10 chromosome, complete genometranscriptional regulator, RpiR family3e-28125
NC_007651:1726472:1749745174974517516701926Burkholderia thailandensis E264 chromosome I, complete sequenceglucokinase/transcriptional regulator, RpiR family, fusion4e-28125
NC_016445:1363831:139663113966311397446816Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completesialic acid utilization regulator RpiR family5e-28125
NC_014958:629459:631573631573632421849Deinococcus maricopensis DSM 21211 chromosome, complete genomeRpiR family transcriptional regulator2e-27123
NC_021066:601029:611221611221612078858Raoultella ornithinolytica B6, complete genomeDNA-binding transcriptional repressor RpiR1e-27123
NC_016512:1211653:121444812144481215320873Propionibacterium acnes TypeIA2 P.acn17 chromosome, completetranscriptional regulator4e-27122
NC_007510:973828:9935829935829955101929Burkholderia sp. 383 chromosome 1, complete sequenceGlucokinase4e-27122
NC_014039:1238500:124142412414241242296873Propionibacterium acnes SK137 chromosome, complete genometranscriptional regulator, RpiR family7e-27121
NC_006085:1234587:123938512393851240257873Propionibacterium acnes KPA171202, complete genomeputative transcriptional regulator7e-27121
NC_016516:1203000:120589412058941206766873Propionibacterium acnes TypeIA2 P.acn33 chromosome, completetranscriptional regulator1e-26120
NC_016511:1212282:121507712150771215949873Propionibacterium acnes TypeIA2 P.acn31 chromosome, completetranscriptional regulator2e-26120
NC_008525:1013979:103232610323261033168843Pediococcus pentosaceus ATCC 25745, complete genomeTranscriptional regulator2e-26119
NC_017511:852260:870245870245871129885Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomeputative RpiR-family transcriptional regulator2e-26119
NC_009485:1222697:123782312378231238635813Bradyrhizobium sp. BTAi1 chromosome, complete genomeRpiR family transcriptional regulator4e-26118
NC_013895:605488:606998606998607921924Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completetranscriptional regulator, RpiR family8e-26117
NC_008010:200796:205845205845206717873Deinococcus geothermalis DSM 11300 plasmid 1, complete sequencetranscriptional regulator, RpiR family2e-25116
NC_020063:2449554:247206824720682472898831Enterobacteriaceae bacterium strain FGI 57, complete genometranscriptional regulator1e-24114
NC_012947:4106031:412229541222954123185891Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeDNA-binding transcriptional repressor RpiR2e-24113
AC_000091:4313167:431677943167794317669891Escherichia coli W3110 DNA, complete genomeDNA-binding transcriptional repressor3e-24112
CP002516:4431235:444760744476074448497891Escherichia coli KO11, complete genometranscriptional regulator, RpiR family3e-24112
NC_010473:4409492:441048644104864411376891Escherichia coli str. K-12 substr. DH10B, complete genomeDNA-binding transcriptional repressor3e-24112
NC_010468:4305105:432097043209704321860891Escherichia coli ATCC 8739, complete genometranscriptional regulator, RpiR family3e-24112
NC_010498:4656716:465771046577104658600891Escherichia coli SMS-3-5, complete genomeHTH-type transcriptional regulator RpiR (Als operon repressor)3e-24112
NC_000913:4307471:431012443101244311014891Escherichia coli K12, complete genomeDNA-binding transcriptional repressor3e-24112
NC_008563:4656000:465876746587674659690924Escherichia coli APEC O1, complete genomeputative transcriptional regulator RpiR3e-24112
NC_004431:4867648:487126048712604872183924Escherichia coli CFT073, complete genomeProtein rpiR3e-24112
NC_004193:375416:641553641553642401849Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator4e-24112
NC_008253:4541915:454482645448264545716891Escherichia coli 536, complete genomeprotein RpiR3e-24112
NC_011750:4719477:472047147204714721361891Escherichia coli IAI39 chromosome, complete genomeDNA-binding transcriptional repressor RpiR3e-24112
NC_006905:3717306:372665337266533727534882Salmonella enterica subsp. enterica serovar Choleraesuis strProtein rpiR3e-24112
NC_014841:131308:131308131308132201894Pantoea sp. At-9b plasmid pPAT9B04, complete sequencetranscriptional regulator, RpiR family3e-24112
NC_013353:5022196:502319050231905024080891Escherichia coli O103:H2 str. 12009, complete genometranscriptional repressor3e-24112
AP010958:5022196:502319050231905024080891Escherichia coli O103:H2 str. 12009 DNA, complete genometranscriptional repressor3e-24112
NC_016902:4431235:444760744476074448497891Escherichia coli KO11FL chromosome, complete genomeRpiR family transcriptional regulator3e-24112
NC_012967:4289929:429092342909234291813891Escherichia coli B str. REL606 chromosome, complete genomeDNA-binding transcriptional repressor RpiR3e-24112
NC_012759:4247865:424885942488594249749891Escherichia coli BW2952 chromosome, complete genomeDNA-binding transcriptional repressor RpiR3e-24112
NC_011742:4569683:457329545732954574185891Escherichia coli S88 chromosome, complete genomeDNA-binding transcriptional repressor RpiR3e-24112
NC_011415:4582388:458338245833824584272891Escherichia coli SE11 chromosome, complete genomeDNA-binding transcriptional repressor RpiR3e-24112
NC_015634:2933712:295589529558952956770876Bacillus coagulans 2-6 chromosome, complete genomeRpiR family transcriptional regulator6e-24111
NC_009439:4913767:491696849169684917834867Pseudomonas mendocina ymp, complete genomeRpiR family transcriptional regulator6e-24111
NC_012912:2553391:257205325720532572922870Dickeya zeae Ech1591, complete genometranscriptional regulator, RpiR family5e-23108
NC_016901:2542110:254373725437372544591855Shewanella baltica OS678 chromosome, complete genomeRpiR family transcriptional regulator3e-23108
NC_013421:2306000:230610423061042307030927Pectobacterium wasabiae WPP163, complete genometranscriptional regulator, RpiR family7e-23107
NC_015152:272500:274117274117274971855Spirochaeta sp. Buddy chromosome, complete genomeRpiR family transcriptional regulator1e-22107
CU928160:1978500:198239319823931983262870Escherichia coli IAI1 chromosome, complete genomeputative DNA-binding transcriptional regulator5e-21102
NC_011741:1978500:198239319823931983262870Escherichia coli IAI1 chromosome, complete genomeDNA-binding transcriptional regulator HexR5e-21102
NC_013361:2591829:259568825956882596557870Escherichia coli O26:H11 str. 11368 chromosome, complete genomeDNA-binding transcriptional regulator HexR5e-21102
NC_013364:2355298:235915723591572360026870Escherichia coli O111:H- str. 11128, complete genomeputative DNA-binding transcriptional regulator5e-21102
NC_012691:2146473:215826621582662159144879Tolumonas auensis DSM 9187, complete genometranscriptional regulator, RpiR family3e-21102
NC_007384:1355060:137077813707781371647870Shigella sonnei Ss046, complete genomehypothetical protein7e-21101
NC_016822:1339058:135362613536261354495870Shigella sonnei 53G, complete genomeDNA-binding transcriptional regulator HexR7e-21101
NC_010658:1933605:193746419374641938333870Shigella boydii CDC 3083-94, complete genometranscriptional regulator, rpiR family8e-21100
NC_003210:2879906:288124328812432882049807Listeria monocytogenes EGD-e, complete genomehypothetical protein9e-21100
NC_008800:4013298:402615540261554027015861Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,transcriptional regulator2e-2099.8
NC_003909:927955:935762935762936625864Bacillus cereus ATCC 10987, complete genometranscriptional regulator, RpiR family, putative2e-2099.8
NC_015224:3892972:390341039034103904270861Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,transcriptional regulator6e-2098.2
NC_007645:713930:730736730736731593858Hahella chejuensis KCTC 2396, complete genomeTranscriptional regulator1e-1997.1
NC_011741:2715246:272234927223492723197849Escherichia coli IAI1 chromosome, complete genomeputative DNA-binding transcriptional regulator1e-1893.6
CU928160:2715246:272234927223492723197849Escherichia coli IAI1 chromosome, complete genomefused putative DNA-binding transcriptional regulator; putative isomerase1e-1893.6
NC_015389:114469:120227120227121075849Coriobacterium glomerans PW2 chromosome, complete genometranscriptional regulator, RpiR family2e-1892.8
NC_013171:1677543:168050016805001681339840Anaerococcus prevotii DSM 20548, complete genometranscriptional regulator, RpiR family6e-1891.7
NC_007929:1463295:149820914982091499045837Lactobacillus salivarius subsp. salivarius UCC118, complete genomeTranscriptional regulator, RpiR family7e-1891.3
NC_013855:1268424:128469812846981285603906Azospirillum sp. B510 plasmid pAB510a, complete sequenceDNA-binding transcriptional regulator1e-1790.5
NC_010999:2450974:245456624545662455396831Lactobacillus casei, complete genomeTranscriptional regulator2e-1789.7
NC_009785:130252:132523132523133377855Streptococcus gordonii str. Challis substr. CH1, complete genomephosphosugar-binding transcriptional regulator, RpiR family6e-1684.7
NC_015389:809474:815699815699816547849Coriobacterium glomerans PW2 chromosome, complete genometranscriptional regulator, RpiR family3e-1582.4
NC_014334:99000:117879117879118748870Lactobacillus casei str. Zhang chromosome, complete genometranscriptional regulator4e-1582.4
NC_004668:3156247:316345631634563164313858Enterococcus faecalis V583, complete genomephosphosugar-binding transcriptional regulator, putative6e-1478.2
NC_016602:2292518:231509123150912315954864Vibrio furnissii NCTC 11218 chromosome 1, complete sequencetranscriptional regulator6e-1375.1
NC_015389:175406:182891182891183802912Coriobacterium glomerans PW2 chromosome, complete genometranscriptional regulator, RpiR family8e-1374.7
NC_014364:394899:436135436135436983849Spirochaeta smaragdinae DSM 11293 chromosome, complete genometranscriptional regulator, RpiR family9e-1374.3
NC_014751:302152:303967303967304800834Mycoplasma leachii PG50 chromosome, complete genomeSIS domain protein8e-1271.2
NC_016630:1385719:139135113913511392217867Filifactor alocis ATCC 35896 chromosome, complete genometranscriptional regulator2e-1170.1
NC_014657:1193985:119567511956751196538864Caldicellulosiruptor owensensis OL chromosome, complete genometranscriptional regulator, rpir family5e-1065.5
NC_008800:4389687:438968743896874390520834Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein8e-1064.7
NC_009328:3322802:332775633277563328502747Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeregulator1e-0860.5
NC_015389:616430:643533643533644402870Coriobacterium glomerans PW2 chromosome, complete genometranscriptional regulator, RpiR family1e-0860.5
NC_013192:171000:189492189492190352861Leptotrichia buccalis DSM 1135, complete genometranscriptional regulator, RpiR family1e-0860.5
NC_011745:291422:310012310012310845834Escherichia coli ED1a chromosome, complete genomeputative transcriptional regulator3e-0859.3
NC_017154:3094000:311353131135313114385855Yersinia pestis D106004 chromosome, complete genomehypothetical protein5e-0858.5
NC_003143:2895617:289561728956172896471855Yersinia pestis CO92, complete genomehypothetical protein5e-0858.5
NC_004088:1291754:129175412917541292608855Yersinia pestis KIM, complete genomehypothetical protein5e-0858.5
NC_008149:1221637:122163712216371222491855Yersinia pestis Nepal516, complete genomehypothetical protein5e-0858.5
NC_009725:2517428:253457325345732535298726Bacillus amyloliquefaciens FZB42, complete genomehypothetical protein9e-0857.8
NC_008262:2824503:283909428390942839822729Clostridium perfringens SM101, complete genometranscriptional regulator, RpiR family3e-0756.2
NC_017188:2512357:252539225253922526117726Bacillus amyloliquefaciens TA208 chromosome, complete genomehypothetical protein3e-0755.8
NC_017191:2514401:252743625274362528161726Bacillus amyloliquefaciens XH7 chromosome, complete genomehypothetical protein3e-0755.8
NC_011985:61003:972699726998153885Agrobacterium radiobacter K84 chromosome 1, complete genometranscriptional regulator protein2e-0653.5
NC_003413:214120:2354892354892367931305Pyrococcus furiosus DSM 3638, complete genomehexulose-6-phosphate synthase (d-arabino 3-hexulose 6-phosphate formaldehyde lyase)3e-0652.8
NC_015389:1070500:108697710869771087768792Coriobacterium glomerans PW2 chromosome, complete genometranscriptional regulator, RpiR family5e-0652
NC_020410:2509057:253812525381252538850726Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeTranscriptional regulator, RpiR family / Phosphosugar-binding transcriptional regulator, RpiR family6e-0651.6
NC_014838:589581:610497610497611387891Pantoea sp. At-9b plasmid pPAT9B01, complete sequencetranscriptional regulator, RpiR family8e-0651.2
NC_020063:2077233:209723820972382098134897Enterobacteriaceae bacterium strain FGI 57, complete genometranscriptional regulator1e-0551.2