Pre_GI: BLASTP Hits

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Query: NC_006511:1770000:1770890 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC

Start: 1770890, End: 1771420, Length: 531

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar has a narrow host range and causes a typhoid-like (paratyphoid fever) illness in humans. It is especially prevalent in southern and eastern Asia, and has been associated with some particularly virulent outbreaks. A number of isolates are increasingly antibiotic resistant. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011147:1763681:176607317660731766603531Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein3e-95347
NC_016863:1165232:118490911849091185439531Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein8e-95345
NC_016857:1163919:118359611835961184126531Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative inner membrane protein8e-95345
NC_016856:1165941:118561811856181186148531Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein8e-95345
NC_016810:1163919:118359611835961184126531Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein8e-95345
NC_004631:1842050:184292118429211843451531Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein8e-95345
NC_003198:1117687:113773211377321138262531Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein8e-95345
NC_003197:1207597:122745612274561227986531Salmonella typhimurium LT2, complete genomeputative inner membrane protein7e-94342
NC_006905:1186895:120754212075421208072531Salmonella enterica subsp. enterica serovar Choleraesuis strputative inner membrane protein6e-94342
NC_017046:1164176:118367511836751184199525Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein1e-93341
NC_011294:2009388:201070320107032011233531Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein3e-93340
NC_010102:1979742:198061419806141981138525Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-92337
NC_011094:1166271:118578111857811186293513Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein4e-92336
NC_016831:947281:990494990494991018525Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein2e-91334
NC_011205:2137696:213901121390112139523513Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein2e-90331
NC_016832:1838220:183995618399561840450495Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Inner membrane protein ycdZ3e-88323
NC_011083:1216500:123184112318411232335495Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,inner membrane protein YcdZ3e-88323
NC_011080:1209935:122927912292791229773495Salmonella enterica subsp. enterica serovar Newport str. SL254,inner membrane protein YcdZ8e-88322
NC_016860:1205282:122517812251781225672495Salmonella enterica subsp. enterica serovar Typhimurium strinner membrane protein YcdZ3e-87320
NC_012125:2646792:264766326476632648157495Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein6e-87319
NC_010067:1782998:178385117838511784345495Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-86317
NC_008258:1076922:109450910945091095048540Shigella flexneri 5 str. 8401, complete genomehypothetical protein9e-79292
NC_010468:2809125:280912528091252809646522Escherichia coli ATCC 8739, complete genomeprotein of unknown function DUF10972e-77287
NC_004337:1065609:107514710751471075668522Shigella flexneri 2a str. 301, complete genomehypothetical protein3e-77287
NC_013716:1178383:119764711976471198177531Citrobacter rodentium ICC168, complete genomehypothetical protein1e-75281
NC_015968:1709680:171560017156001716091492Enterobacter asburiae LF7a chromosome, complete genomehypothetical protein1e-75281
NC_000913:1087062:109951910995191100010492Escherichia coli K12, complete genomepredicted inner membrane protein4e-74276
AC_000091:1083798:110053711005371101028492Escherichia coli W3110 DNA, complete genomepredicted inner membrane protein4e-74276
NC_016514:1701273:170536817053681705898531Enterobacter cloacae EcWSU1 chromosome, complete genomeinner membrane protein YcdZ9e-73272
NC_015663:3466471:350172135017213502203483Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein5e-71266
NC_014121:2629075:264431826443182644740423Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein3e-61233
NC_015224:3191000:319178131917813192272492Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein6e-61233
NC_008800:1497746:151399715139971514488492Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein3e-60230
NC_009778:2227627:223568722356872236163477Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein1e-40165
NC_015425:405058:408528408528408995468Clostridium botulinum BKT015925 chromosome, complete genomeglutathione-regulated potassium-efflux system protein8e-25113