Pre_GI: BLASTP Hits

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Query: NC_006511:1273162:1288281 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC

Start: 1288281, End: 1288883, Length: 603

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar has a narrow host range and causes a typhoid-like (paratyphoid fever) illness in humans. It is especially prevalent in southern and eastern Asia, and has been associated with some particularly virulent outbreaks. A number of isolates are increasingly antibiotic resistant. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011147:1267005:128212412821241282726603Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein5e-116416
NC_003197:1753663:175788917578891758491603Salmonella typhimurium LT2, complete genomeputative transcriptional regulator4e-114410
NC_016810:1709695:171474217147421715344603Salmonella enterica subsp. enterica serovar Typhimurium strDNA-binding protein4e-114410
NC_016856:1763640:176786617678661768468603Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative transcriptional regulator4e-114410
NC_016857:1709695:171474217147421715344603Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative transcriptional regulator4e-114410
NC_016860:1752000:175558017555801756182603Salmonella enterica subsp. enterica serovar Typhimurium strputative transcriptional regulator4e-114410
NC_016863:1711832:171605817160581716660603Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative transcriptional regulator4e-114410
NC_017046:1709578:171462517146251715227603Salmonella enterica subsp. enterica serovar Typhimurium str. 798DNA-binding protein4e-114410
NC_004631:1623511:162855816285581629160603Salmonella enterica subsp. enterica serovar Typhi Ty2, completeconserved hypothetical DNA-binding protein2e-114410
NC_003198:1336894:135202213520221352624603Salmonella enterica subsp. enterica serovar Typhi str. CT18,conserved hypothetical DNA-binding protein2e-114410
NC_011094:1726000:173106917310691731671603Salmonella enterica subsp. enterica serovar Schwarzengrund strtranscriptional regulator, Cro/CI family protein2e-114410
NC_006905:1766000:177105217710521771654603Salmonella enterica subsp. enterica serovar Choleraesuis strputative transcriptional regulator2e-114410
NC_011080:1750000:175424417542441754846603Salmonella enterica subsp. enterica serovar Newport str. SL254,transcriptional regulator, Cro/CI family5e-113406
NC_011149:1429523:144464314446431445245603Salmonella enterica subsp. enterica serovar Agona str. SL483,transcriptional regulator, Cro/CI family2e-112404
NC_016816:4129299:415585641558564156458603Pantoea ananatis LMG 5342, complete genomeB3/4 domain-containing protein1e-74278
NC_020063:3690308:373506937350693735671603Enterobacteriaceae bacterium strain FGI 57, complete genomeputative transcriptional regulator1e-72271
NC_020064:79422:976759767598283609Serratia marcescens FGI94, complete genomeputative transcriptional regulator3e-70264
NC_014121:4577324:458073445807344581336603Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein3e-70264
NC_003296:1696958:170194817019481702565618Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePUTATIVE TRANSCRIPTION REGULATOR PROTEIN1e-67255
NC_003296:1665569:167175816717581672375618Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePUTATIVE DNA-BINDING TRANSCRIPTIONAL REGULATORY TRANSCRIPTION REGULATOR PROTEIN1e-67255
NC_015379:3736500:375449337544933755095603Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative Transcription factor, Xre family1e-59229
NC_016830:3230939:323805032380503238652603Pseudomonas fluorescens F113 chromosome, complete genomecro ci family transcriptional regulator1e-59229
NC_016516:2314115:232039223203922320976585Propionibacterium acnes TypeIA2 P.acn33 chromosome, completecupin domain protein1e-29129
NC_016511:2321999:232953423295342330118585Propionibacterium acnes TypeIA2 P.acn31 chromosome, completecupin domain protein1e-29129
NC_016512:2322598:232886723288672329460594Propionibacterium acnes TypeIA2 P.acn17 chromosome, completecupin domain protein1e-29129
NC_006085:2384892:239089723908972391763867Propionibacterium acnes KPA171202, complete genomeputative transcriptional regulator3e-29128
NC_014039:2320307:232631423263142327180867Propionibacterium acnes SK137 chromosome, complete genomecupin domain protein2e-29128
NC_014328:2518081:253808325380832538637555Clostridium ljungdahlii ATCC 49587 chromosome, complete genomehypothetical protein1e-1686.3
NC_012660:4149487:415199341519934152619627Pseudomonas fluorescens SBW25 chromosome, complete genomeputative DNA binding protein5e-1684.3
NC_007907:4956500:498991149899114990465555Desulfitobacterium hafniense Y51, complete genomehypothetical protein2e-1582
NC_015563:3979500:399881739988173999386570Delftia sp. Cs1-4 chromosome, complete genomehelix-turn-helix domain-containing protein2e-1479.3
NC_007948:4558000:460677746067774607370594Polaromonas sp. JS666, complete genometranscriptional regulator, XRE family3e-1478.2
NC_004557:1553000:155369415536941554401708Clostridium tetani E88, complete genomeputative transcriptional regulatory protein6e-1477.4
NC_014624:1369642:137228713722871372838552Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein6e-1477.4
NC_015138:693865:707847707847708416570Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completehelix-turn-helix domain-containing protein1e-1376.6
NC_009617:1487110:149075414907541491308555Clostridium beijerinckii NCIMB 8052 chromosome, complete genomehelix-turn-helix domain-containing protein2e-1375.5
NC_014121:4043198:405680640568064057378573Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein2e-1272
NC_009617:4805413:480886648088664809417552Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeXRE family transcriptional regulator2e-1272
NC_013406:3650300:365837636583763658936561Paenibacillus sp. Y412MC10 chromosome, complete genomeXRE family transcriptional regulator4e-1271.2
NC_009075:3113393:294829483556609Burkholderia pseudomallei 668 chromosome II, complete sequenceDNA-binding protein4e-1168.2
NC_009078:3087759:294829483556609Burkholderia pseudomallei 1106a chromosome II, complete sequenceDNA-binding/cupin domain protein4e-1168.2
NC_007435:1825741:184202518420251842633609Burkholderia pseudomallei 1710b chromosome II, complete sequenceputative DNA-binding protein4e-1168.2
NC_007650:2901751:295029503558609Burkholderia thailandensis E264 chromosome II, complete sequenceDNA-binding protein3e-1168.2
NC_009079:2339756:408640864694609Burkholderia mallei NCTC 10247 chromosome I, complete sequenceDNA-binding protein5e-1167.8
NC_006351:3159630:294629463554609Burkholderia pseudomallei K96243 chromosome 2, complete sequenceDNA-binding protein5e-1167.8
NC_008835:1483237:149940114994011500009609Burkholderia mallei NCTC 10229 chromosome I, complete sequenceDNA-binding protein5e-1167.8
NC_008784:1151305:116827711682771168885609Burkholderia mallei SAVP1 chromosome I, complete sequenceDNA-binding protein5e-1167.8
NC_006349:2311817:408640864694609Burkholderia mallei ATCC 23344 chromosome 2, complete sequenceDNA-binding protein5e-1167.8
NC_016048:3856665:387693238769323877567636Oscillibacter valericigenes Sjm18-20, complete genomeputative Xre family DNA-binding protein6e-1167.4
NC_010002:3509506:351042335104233510992570Delftia acidovorans SPH-1, complete genometranscriptional regulator, XRE family6e-1167.4
NC_014532:1481787:150309715030971503672576Halomonas elongata DSM 2581, complete genomehypothetical protein9e-1166.6
NC_014640:5047201:504847650484765049030555Achromobacter xylosoxidans A8 chromosome, complete genomehypothetical protein2e-1065.9
NC_006510:2910000:291967829196782920220543Geobacillus kaustophilus HTA426, complete genomehypothetical protein2e-1065.5
NC_013939:1535071:155165715516571552193537Deferribacter desulfuricans SSM1, complete genomeXRE family transcriptional regulator2e-0962.8
NC_015727:764744:769843769843770589747Cupriavidus necator N-1 plasmid BB1p, complete sequenceCro/CI family transcriptional regulator protein4e-0961.2
NC_011283:1178500:118395211839521184521570Klebsiella pneumoniae 342 chromosome, complete genomeDNA-binding protein4e-0961.2
NC_019673:3253650:325551432555143256071558Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, XRE family4e-0961.2
NC_016818:3736213:375836837583683758922555Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeputative transcriptional regulator4e-0961.2
NC_009089:1283000:131939013193901319941552Clostridium difficile 630, complete genomeputative transcriptional regulator5e-0960.8
NC_004129:2609189:261369426136942614242549Pseudomonas fluorescens Pf-5, complete genomeDNA-binding protein5e-0960.8
NC_013510:747042:762300762300762866567Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, XRE family1e-0859.7
NC_008148:2498000:252032625203262520988663Rubrobacter xylanophilus DSM 9941, complete genometranscriptional regulator, XRE family with cupin sensor1e-0859.3
NC_014306:3210311:323155932315593232116558Erwinia billingiae Eb661, complete genomeTranscriptional regulator3e-0858.5
NC_016002:2652500:265727326572732657857585Pseudogulbenkiania sp. NH8B, complete genomeXRE family transcriptional regulator3e-0858.2
NC_012108:946314:962372962372962944573Desulfobacterium autotrophicum HRM2, complete genometranscriptional regulator (Cro/CI family protein)4e-0858.2
NC_020126:7285452:729938772993877299959573Myxococcus stipitatus DSM 14675, complete genomeXRE family transcriptional regulator4e-0858.2
NC_020134:1328302:133941313394131339952540Clostridium stercorarium subsp. stercorarium DSM 8532, completeputative DNA-binding protein1e-0756.6
NC_014618:1809369:183324018332401833797558Enterobacter cloacae SCF1 chromosome, complete genomecupin1e-0756.2
NC_020064:1962172:199164219916421992199558Serratia marcescens FGI94, complete genomeputative transcriptional regulator1e-0756.2
NC_013716:357928:389831389831390388558Citrobacter rodentium ICC168, complete genometranscriptional regulator of the polyamine metabolism genes2e-0755.8
NC_014960:1697818:171901417190141719634621Anaerolinea thermophila UNI-1, complete genomehypothetical protein4e-0754.7
NC_017273:352150:357368357368357946579Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, completecupin7e-0753.9
NC_010175:2925084:294094629409462941581636Chloroflexus aurantiacus J-10-fl, complete genomeCupin 2 conserved barrel domain protein8e-0753.5
NC_012032:2925000:293613129361312936766636Chloroflexus sp. Y-400-fl, complete genometranscriptional regulator, XRE family8e-0753.5
NC_013947:4363250:437654343765434377166624Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, XRE family1e-0653.1
NC_015376:3320818:335258433525843353144561Burkholderia gladioli BSR3 chromosome chromosome 2, completetranscriptional regulator, XRE family1e-0653.1
NC_009253:897684:945674945674946330657Desulfotomaculum reducens MI-1 chromosome, complete genomeXRE family transcriptional regulator1e-0652.8
NC_013235:464049:465497465497466090594Nakamurella multipartita DSM 44233, complete genometranscriptional regulator, XRE family2e-0652.4
NC_009253:897684:946674946674947330657Desulfotomaculum reducens MI-1 chromosome, complete genomeXRE family transcriptional regulator2e-0652
NC_014307:3179100:318300231830023183589588Ralstonia solanacearum CFBP2957 chromosome, complete genometranscriptional regulatory protein with hth domain3e-0651.6
NC_012808:2886282:289424728942472894843597Methylobacterium extorquens AM1, complete genomeputative transcriptional regulator, XRE family3e-0651.6
NC_006350:1084930:108965110896511090214564Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative DNA-binding protein4e-0651.2
NC_014654:2311818:232518923251892325725537Halanaerobium sp. 'sapolanicus' chromosome, complete genomeCupin 2 conserved barrel domain protein4e-0651.2
NC_016645:279232:3038763038763054201545Pyrobaculum sp. 1860 chromosome, complete genometranscriptional regulator, XRE family5e-0651.2