Pre_GI: BLASTP Hits

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Query: NC_006511:1273162:1278851 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC

Start: 1278851, End: 1279441, Length: 591

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar has a narrow host range and causes a typhoid-like (paratyphoid fever) illness in humans. It is especially prevalent in southern and eastern Asia, and has been associated with some particularly virulent outbreaks. A number of isolates are increasingly antibiotic resistant. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011147:1267005:127269412726941273284591Salmonella enterica subsp. enterica serovar Paratyphi A strtranscriptional regulator7e-112402
NC_011094:1726000:174050417405041741094591Salmonella enterica subsp. enterica serovar Schwarzengrund strtranscriptional regulator, TetR family protein5e-111399
NC_003198:1336894:134258513425851343175591Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative transcriptional regulator1e-110398
NC_004631:1623511:163800716380071638597591Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative transcriptional regulator1e-110398
NC_011080:1750000:176368517636851764275591Salmonella enterica subsp. enterica serovar Newport str. SL254,transcriptional regulator, TetR family5e-110396
NC_003197:1753663:176733217673321767922591Salmonella typhimurium LT2, complete genomeputative regulatory protein4e-110396
NC_016810:1709695:172418617241861724776591Salmonella enterica subsp. enterica serovar Typhimurium strputative transcriptional regulator4e-110396
NC_016856:1763640:177731017773101777900591Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative regulatory protein4e-110396
NC_016857:1709695:172418617241861724776591Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative regulatory protein4e-110396
NC_016860:1752000:176502317650231765613591Salmonella enterica subsp. enterica serovar Typhimurium strputative transcriptional regulator4e-110396
NC_016863:1711832:172550217255021726092591Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative regulatory protein4e-110396
NC_017046:1709578:172406917240691724659591Salmonella enterica subsp. enterica serovar Typhimurium str. 798transcriptional regulator4e-110396
NC_006905:1766000:178046117804611781051591Salmonella enterica subsp. enterica serovar Choleraesuis strputative bacterial regulatory helix-turn-helix proteins, araC family1e-109395
NC_011149:1429523:143521314352131435803591Salmonella enterica subsp. enterica serovar Agona str. SL483,transcriptional regulator, TetR family2e-109394
NC_009648:1487692:151769215176921518285594Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative regulatory protein TetR1e-71268
NC_012731:2302974:232991623299162330545630Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeTetR family transcriptional regulator3e-71267
NC_003902:1220600:122060012206001221190591Xanthomonas campestris pv. campestris str. ATCC 33913, completehypothetical protein7e-66249
NC_016010:1247008:125118812511881251784597Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeTetR family transcriptional regulator3e-65247
NC_015379:4249238:427499442749944275626633Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative Transcription factor, TetR family5e-63240
NC_011742:4795733:480355848035584804151594Escherichia coli S88 chromosome, complete genometranscriptional regulator8e-60229
NC_010473:4564590:457395545739554574548594Escherichia coli str. K-12 substr. DH10B, complete genomepredicted transcriptional regulator2e-59228
AC_000091:4472000:447880444788044479397594Escherichia coli W3110 DNA, complete genomepredicted transcriptional regulator2e-59228
NC_000913:4462782:447214744721474472740594Escherichia coli K12, complete genomepredicted transcriptional regulator2e-59228
NC_010498:4821519:482934548293454829938594Escherichia coli SMS-3-5, complete genomeTetR family transcriptional regulator2e-59228
NC_012967:4449576:445740144574014457994594Escherichia coli B str. REL606 chromosome, complete genomeputative transcriptional regulator7e-59226
NC_012947:3947238:395611439561143956707594Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeTetR family transcriptional regulator7e-59226
NC_010658:4494103:450496945049694505562594Shigella boydii CDC 3083-94, complete genometranscriptional regulator, TetR family7e-59226
NC_007613:4217557:424768342476834247937255Shigella boydii Sb227, complete genomehypothetical protein8e-1786.7
NC_010410:3719599:374375137437513744401651Acinetobacter baumannii AYE, complete genomeputative regulator (TetR/AcrR family)1e-1686.3
NC_014659:4908182:491490549149054915444540Rhodococcus equi 103S, complete genomeTetR family transcriptional regulator2e-1685.5
NC_015709:1769806:178428217842821784989708Zymomonas mobilis subsp. pomaceae ATCC 29192 chromosome, completeTetR family transcriptional regulator2e-1685.5
NC_016628:935420:940067940067940657591Vibrio furnissii NCTC 11218 chromosome 2, complete sequencetranscriptional regulator, TetR family3e-1684.7
NC_014623:9492000:949227594922759492889615Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeTetR family transcriptional regulator4e-1684.7
NC_002927:4392768:441134744113474411967621Bordetella bronchiseptica RB50, complete genomeputative TetR-family transcriptional regulator1e-1583.2
NC_008705:868623:931779931779932327549Mycobacterium sp. KMS, complete genometranscriptional regulator, TetR family1e-1583.2
NC_008146:861319:923050923050923598549Mycobacterium sp. MCS, complete genometranscriptional regulator, TetR family1e-1583.2
NC_010002:4326509:432650943265094327135627Delftia acidovorans SPH-1, complete genometranscriptional regulator, TetR family3e-1581.3
NC_015563:3203012:325163832516383252264627Delftia sp. Cs1-4 chromosome, complete genomeregulatory protein TetR4e-1581.3
NC_021177:2241647:224302222430222243660639Streptomyces fulvissimus DSM 40593, complete genomeTetR family transcriptional regulator4e-1581.3
NC_010551:2537876:255936425593642559978615Burkholderia ambifaria MC40-6 chromosome 1, complete sequencetranscriptional regulator, TetR family5e-1580.9
NC_010804:2518695:253523025352302535865636Burkholderia multivorans ATCC 17616 chromosome 1, completeTetR family transcriptional regulator2e-1479.3
NC_010084:988908:988908988908989543636Burkholderia multivorans ATCC 17616 chromosome 1, completeTetR family transcriptional regulator2e-1479.3
NC_016631:3245501:325459032545903255171582Granulicella mallensis MP5ACTX8 chromosome, complete genomeregulatory protein TetR1e-1479.3
NC_008542:2631138:265003426500342650657624Burkholderia cenocepacia HI2424 chromosome 1, complete sequencetranscriptional regulator, TetR family3e-1478.6
NC_008060:1945597:196449319644931965116624Burkholderia cenocepacia AU 1054 chromosome 1, complete sequencetranscriptional regulator, TetR family3e-1478.6
NC_020418:3102460:310548531054853106096612Morganella morganii subsp. morganii KT, complete genomeTranscriptional regulator, TetR family3e-1478.2
NC_002927:1292573:129502512950251295645621Bordetella bronchiseptica RB50, complete genomeputative TetR-family transcriptional regulator4e-1477.8
NC_007510:2805121:281997328199732820587615Burkholderia sp. 383 chromosome 1, complete sequencetranscriptional regulator, TetR family7e-1477
NC_020064:1409596:143973814397381440349612Serratia marcescens FGI94, complete genometranscriptional regulator3e-1375.1
NC_009142:5459819:546278154627815463392612Saccharopolyspora erythraea NRRL 2338, complete genometranscriptional regulator, TetR family1e-1273.2
NC_021066:3028421:304263130426313043224594Raoultella ornithinolytica B6, complete genomeTetR family transcriptional regulator2e-1272
NC_020063:2077233:208847920884792089114636Enterobacteriaceae bacterium strain FGI 57, complete genometranscriptional regulator9e-1270.1
NC_016582:11672500:116874191168741911688027609Streptomyces bingchenggensis BCW-1 chromosome, complete genomeTetR family transcriptional regulator2e-1168.6
NC_013947:373862:390307390307390966660Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, TetR family4e-1167.8
NC_019897:73957:109118109118109699582Thermobacillus composti KWC4 chromosome, complete genometranscriptional regulator3e-1065.1
NC_016582:11380000:113875491138754911388190642Streptomyces bingchenggensis BCW-1 chromosome, complete genomeTetR family transcriptional regulator4e-1064.7
NC_012968:1191037:120075812007581201360603Methylotenera mobilis JLW8, complete genometranscriptional regulator, TetR family8e-1063.5
NC_015559:1478114:149093514909351491531597Marinomonas posidonica IVIA-Po-181 chromosome, complete genomeTetR family transcriptional regulator1e-0963.2
NC_014838:589581:608819608819609418600Pantoea sp. At-9b plasmid pPAT9B01, complete sequencetranscriptional regulator, TetR family2e-0962
NC_015856:3059737:307258730725873073210624Collimonas fungivorans Ter331 chromosome, complete genomeTetR family transcriptional regulator2e-0962
NC_015856:3832000:383402238340223834645624Collimonas fungivorans Ter331 chromosome, complete genomeTetR family transcriptional regulator3e-0961.6
NC_014664:1669642:168504116850411685649609Rhodomicrobium vannielii ATCC 17100 chromosome, complete genomeregulatory protein TetR6e-0960.8
NC_016514:2079975:209723320972332097853621Enterobacter cloacae EcWSU1 chromosome, complete genomeprotein YcfQ8e-0960.5
NC_007948:517893:533902533902534492591Polaromonas sp. JS666, complete genometranscriptional regulator, TetR family7e-0960.5
NC_009720:3281000:329115032911503291818669Xanthobacter autotrophicus Py2, complete genomeTetR family transcriptional regulator9e-0960.1
NC_013956:3273340:329451032945103295127618Pantoea ananatis LMG 20103 chromosome, complete genomeYcfQ1e-0859.3
NC_013235:5127148:513109951310995131689591Nakamurella multipartita DSM 44233, complete genometranscriptional regulator, TetR family2e-0859.3
NC_012914:1923500:193114719311471931740594Paenibacillus sp. JDR-2, complete genometranscriptional regulator, TetR family2e-0858.5
NC_014258:355845:365469365469366095627Pantoea vagans C9-1 plasmid pPag3, complete sequenceHTH-type transcriptional repressor AcnR4e-0857.8
NC_016935:2503071:254529025452902545868579Paenibacillus mucilaginosus 3016 chromosome, complete genomeTetR family transcriptional regulator5e-0857.4
NC_015690:1967244:201240220124022012980579Paenibacillus mucilaginosus KNP414 chromosome, complete genomeTetR family transcriptional regulator5e-0857.4
NC_016816:1137904:114302111430211143638618Pantoea ananatis LMG 5342, complete genometranscriptional regulator6e-0857.4
NC_014659:2737843:273784327378432738469627Rhodococcus equi 103S, complete genomeTetR family transcriptional regulator7e-0857.4
NC_020063:3690308:371432137143213714902582Enterobacteriaceae bacterium strain FGI 57, complete genometranscriptional regulator9e-0857
NC_018681:2985078:299752129975212998117597Nocardia brasiliensis ATCC 700358 chromosome, complete genometetr family transcriptional regulator8e-0857
NC_009142:5519208:552635655263565526955600Saccharopolyspora erythraea NRRL 2338, complete genomeTetR-family transcriptional regulator7e-0857
NC_016047:637778:653172653172653747576Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completetranscriptional regulator TetR1e-0756.6
NC_017186:2252438:225417822541782254768591Amycolatopsis mediterranei S699 chromosome, complete genomeTetR family transcriptional regulator2e-0755.8
NC_014318:2252417:225415722541572254747591Amycolatopsis mediterranei U32 chromosome, complete genomeTetR family transcriptional regulator2e-0755.8
NC_007492:3384077:339444033944403395021582Pseudomonas fluorescens PfO-1, complete genomeTranscriptional Regulator, TetR family3e-0755.1
NC_013406:3521489:354052835405283541106579Paenibacillus sp. Y412MC10 chromosome, complete genomeTetR family transcriptional regulator3e-0754.7
NC_015690:1348691:137475713747571375335579Paenibacillus mucilaginosus KNP414 chromosome, complete genomeTetR family transcriptional regulator4e-0754.7
NC_014841:41773:551085510855716609Pantoea sp. At-9b plasmid pPAT9B04, complete sequencetranscriptional regulator, TetR family4e-0754.7
NC_016935:1868839:189862518986251899203579Paenibacillus mucilaginosus 3016 chromosome, complete genomeTetR family transcriptional regulator4e-0754.7
NC_010170:1470755:148942714894271490008582Bordetella petrii, complete genometranscriptional regulator, TetR-family6e-0753.9
NC_014218:1663486:166664816666481667313666Arcanobacterium haemolyticum DSM 20595 chromosome, complete genometranscriptional regulator, TetR family6e-0753.9
UCMB5137:1:265826583233576Bacillus atrophaeus UCMB-5137hypothetical protein1e-0653.1
NC_016641:2291363:231364123136412314216576Paenibacillus terrae HPL-003 chromosome, complete genomeTetR family transcriptional regulator2e-0652.4
NC_018720:1186058:119779911977991198218420Bifidobacterium asteroides PRL2011 chromosome, complete genometranscriptional regulator, TetR family2e-0652
NC_014306:4901390:491379349137934914401609Erwinia billingiae Eb661, complete genomeTranscriptional regulator, TetR family3e-0651.6