Pre_GI: BLASTP Hits

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Query: NC_006361:2534192:2539992 Nocardia farcinica IFM 10152, complete genome

Start: 2539992, End: 2540801, Length: 810

Host Lineage: Nocardia farcinica; Nocardia; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This type strain was isolated from the bronchus of a male Japanese patient. Opportunistic human pathogen. This genus was originally described from specimens isolated by plating soil suspensions on diagnostic sensitivity test plates augmented with antifungal agents. Organisms in this genus cause opportunistic human pulmonary and systemic nocardiosis. This can complicate existing debilitating conditions such as leukemia, lymphoma, or other neoplasms, or illnesses in patients with compromised immune systems.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014550:1487062:150191715019171502696780Arthrobacter arilaitensis Re117, complete genomeDNA binding domain-containing protein2e-56219
NC_015376:3320818:332540533254053326271867Burkholderia gladioli BSR3 chromosome chromosome 2, completehelix-turn-helix domain protein3e-30132
NC_014666:5057000:506094950609495061764816Frankia sp. EuI1c chromosome, complete genomehelix-turn-helix domain protein1e-29130
NC_015677:3179910:320551732055173206407891Ramlibacter tataouinensis TTB310 chromosome, complete genomeXRE family transcriptional regulator2e-27122
NC_013282:1842412:185523218552321856071840Cronobacter turicensis, complete genomehypothetical protein5e-26118
NC_009778:1222273:123668112366811237520840Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein7e-26117
NC_020260:1293860:131331013133101314149840Cronobacter sakazakii Sp291, complete genomehypothetical protein7e-26117
NC_011283:3177350:317963831796383180480843Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein9e-26117
NC_015690:2553837:255904625590462559747702Paenibacillus mucilaginosus KNP414 chromosome, complete genomehypothetical protein8e-25114
NC_016935:3103430:310857331085733109274702Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein2e-24113
NC_004547:3866439:388945838894583890258801Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative DNA-binding protein4e-24112
NC_020244:4020315:403209440320944032930837Bacillus subtilis XF-1, complete genomehypothetical protein5e-23108
NC_015137:2616222:266070126607012661564864Burkholderia sp. CCGE1001 chromosome 2, complete sequencehelix-turn-helix domain-containing protein6e-23108
NC_010625:670482:696990696990697844855Burkholderia phymatum STM815 plasmid pBPHY01, complete sequencetranscriptional regulator, XRE family1e-22107
NC_015556:2265940:228363422836342284488855Pseudomonas fulva 12-X chromosome, complete genomehelix-turn-helix domain protein4e-22105
UCMB5137:3660165:367782136778213678657837Bacillus atrophaeus UCMB-5137hypothetical protein6e-22104
NC_008577:1455000:148304914830491483843795Shewanella sp. ANA-3 chromosome 1, complete sequencetranscriptional regulator, XRE family6e-21101
NC_014532:988351:100425810042581005091834Halomonas elongata DSM 2581, complete genomehypothetical protein8e-21100
NC_016612:2902628:292296229229622923825864Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein8e-2097.4
NC_015566:4662171:466725246672524668028777Serratia sp. AS12 chromosome, complete genomehelix-turn-helix domain-containing protein3e-1995.5
NC_015953:6212366:621236662123666213253888Streptomyces sp. SirexAA-E chromosome, complete genomeXRE family transcriptional regulator4e-1995.5
NC_013854:1686997:169002616900261690946921Azospirillum sp. B510, complete genometranscriptional regulator5e-1995.1
NC_006512:1722138:172341217234121724239828Idiomarina loihiensis L2TR, complete genomePredicted DNA-binding protein, possible transcriptional regulator7e-1994.4
NC_009436:1141376:116825311682531169122870Enterobacter sp. 638, complete genomehelix-turn-helix domain-containing protein1e-1894
NC_016845:1407339:142612314261231426989867Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein1e-1893.6
NC_009439:3535152:355144935514493552240792Pseudomonas mendocina ymp, complete genomeXRE family transcriptional regulator7e-1891.3
NC_013521:2254534:225982322598232260656834Sanguibacter keddieii DSM 10542, complete genomehypothetical protein1e-1790.5
NC_003450:1395565:141789614178961418873978Corynebacterium glutamicum ATCC 13032, complete genometranscriptional regulator3e-1789
NC_016114:7282882:730149173014917302366876Streptomyces flavogriseus ATCC 33331 chromosome, complete genomehelix-turn-helix domain-containing protein4e-1788.6
NC_013131:7889127:788912778891277890005879Catenulispora acidiphila DSM 44928, complete genomehelix-turn-helix domain protein2e-1686.3
NC_015957:7408466:743114274311427431981840Streptomyces violaceusniger Tu 4113 chromosome, complete genomehelix-turn-helix domain-containing protein2e-1686.3
NC_011891:17940:398153981540717903Anaeromyxobacter dehalogenans 2CP-1, complete genomehelix-turn-helix domain protein8e-1684.3
NC_018581:3323500:333163033316303332622993Gordonia sp. KTR9 chromosome, complete genomeputative transcriptional regulators1e-1584
NC_003888:8594500:859658385965838597410828Streptomyces coelicolor A3(2), complete genomeDNA-binding protein3e-1582.4
NC_009142:2725000:272565027256502726399750Saccharopolyspora erythraea NRRL 2338, complete genomeputative DNA-binding protein, HTH regulator6e-1581.6
NC_014659:4908182:492504249250424925872831Rhodococcus equi 103S, complete genometranscriptional regulator6e-1581.6
NC_016111:581143:604229604229605176948Streptomyces cattleya NRRL 8057, complete genomeDNA-binding protein1e-1377.4
NC_015381:3091500:309870730987073099516810Burkholderia gladioli BSR3 chromosome 1, complete sequenceXRE family transcriptional regulator2e-1376.6
NC_013739:717352:724198724198725076879Conexibacter woesei DSM 14684, complete genometranscriptional regulator, XRE family2e-1376.6
NC_013729:1556922:158123815812381582062825Kribbella flavida DSM 17836, complete genomehelix-turn-helix domain protein2e-1376.3
NC_013729:2133294:213537321353732136215843Kribbella flavida DSM 17836, complete genomehelix-turn-helix domain protein7e-1374.3
NC_017955:3545626:355552235555223556379858Modestobacter marinus, complete genomehelix-turn-helix domain-containing protein2e-1273.2
NC_003888:211748:224404224404225276873Streptomyces coelicolor A3(2), complete genomeDNA-binding protein2e-1272.8
NC_004369:531579:551244551244552026783Corynebacterium efficiens YS-314, complete genomeputative DNA-binding protein5e-1272
NC_016114:4614924:463906246390624639955894Streptomyces flavogriseus ATCC 33331 chromosome, complete genomehelix-turn-helix domain-containing protein4e-1272
NC_015957:7533000:753596675359667536781816Streptomyces violaceusniger Tu 4113 chromosome, complete genomehelix-turn-helix domain-containing protein5e-1271.6
NC_006361:498305:516162516162517031870Nocardia farcinica IFM 10152, complete genomeputative DNA-binding protein7e-1271.2
NC_009921:5400663:541788554178855418808924Frankia sp. EAN1pec, complete genomehelix-turn-helix domain protein8e-1271.2
NC_015514:477935:491035491035491775741Cellulomonas fimi ATCC 484 chromosome, complete genomehelix-turn-helix domain-containing protein1e-1170.5
NC_013929:5431954:544429654442965445189894Streptomyces scabiei 87.22 chromosome, complete genomeDNA-binding protein1e-1170.1
NC_009077:4671417:467464546746454675514870Mycobacterium sp. JLS, complete genomeputative transcriptional regulator, XRE family2e-1169.3
NC_008541:472643:473978473978474868891Arthrobacter sp. FB24 chromosome 1, complete sequencetranscriptional regulator, XRE family8e-1167.8
NC_015957:7348269:734826973482697349198930Streptomyces violaceusniger Tu 4113 chromosome, complete genomehelix-turn-helix domain-containing protein1e-1067
NC_015434:666692:698810698810699736927Verrucosispora maris AB-18-032 chromosome, complete genomehelix-turn-helix domain-containing protein2e-1066.6
NC_008278:2594387:261103026110302612019990Frankia alni ACN14a, complete genomeputative transcriptional regulator3e-1065.9
NC_007777:3000941:3023154302315430241821029Frankia sp. CcI3, complete genometranscriptional regulator, XRE family3e-1065.5
NC_016582:3763476:376639237663923767237846Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein4e-1065.5
NC_013093:2633000:263797126379712638822852Actinosynnema mirum DSM 43827, complete genometranscriptional regulator, XRE family5e-1065.1
NC_016109:8664974:870452587045258705442918Kitasatospora setae KM-6054, complete genomeputative DNA-binding protein1e-0963.9
NC_016109:62000:778377783778754918Kitasatospora setae KM-6054, complete genomeputative DNA-binding protein1e-0963.9
NC_011886:2369980:237334923733492374248900Arthrobacter chlorophenolicus A6, complete genometranscriptional regulator, XRE family2e-0963.5
NC_018681:7692560:771435677143567715204849Nocardia brasiliensis ATCC 700358 chromosome, complete genomehypothetical protein3e-0962.8
NC_013757:3651646:368224736822473683128882Geodermatophilus obscurus DSM 43160, complete genometranscriptional regulator, XRE family1e-0860.8
NC_015957:7408466:742703274270327427937906Streptomyces violaceusniger Tu 4113 chromosome, complete genomehelix-turn-helix domain-containing protein1e-0860.1
NC_015312:6357469:635851063585106359382873Pseudonocardia dioxanivorans CB1190 chromosome, complete genomehelix-turn-helix domain-containing protein2e-0860.1
NC_018681:5627940:567609856760985676886789Nocardia brasiliensis ATCC 700358 chromosome, complete genomeputative DNA-binding protein5e-0858.5
NC_015957:5225903:523467952346795235545867Streptomyces violaceusniger Tu 4113 chromosome, complete genomehelix-turn-helix domain-containing protein2e-0756.2
NC_003888:7659639:768963076896307690454825Streptomyces coelicolor A3(2), complete genomehypothetical protein1e-0653.9
NC_021177:2309615:232628523262852327127843Streptomyces fulvissimus DSM 40593, complete genomeputative transcriptional regulators2e-0653.5
NC_013521:2254534:226336822633682264261894Sanguibacter keddieii DSM 10542, complete genomehypothetical protein2e-0653.1