Query: NC_006155:3846315 Yersinia pseudotuberculosis IP 32953, complete genome
Start: 3846315, End: 3871193, Length: 24879
Host Lineage: Yersinia pseudotuberculosis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria
General Information: This strain is a fully virulent serotype I strain isolated from a human patient. Environmental bacterium that causes gastrointestinal disease. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This organism was first isolated in 1883 by Malassez and Vignal and is termed pseudotuberculosis since it causes lesions in the lung that are similar to those observed during tuberculosis infection. It is ubiquitous in the environment and is a food and waterborne pathogen that affects animals as well as humans by causing gastroenteritis like Yersinia enterocolitica.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_010634:3762532 | 3762532 | 3784249 | 21718 | Yersinia pseudotuberculosis PB1/+, complete genome | 0 | 20860 | BLASTN svg | BLASTP svg |
NC_010465:868402 | 868402 | 895782 | 27381 | Yersinia pseudotuberculosis YPIII, complete genome | 0 | 18520 | BLASTN svg | BLASTP svg |
NC_005810:3917254 | 3917254 | 3952652 | 35399 | Yersinia pestis biovar Microtus str. 91001, complete genome | 0 | 3435 | BLASTN svg | BLASTP svg |
NC_020211:4484817* | 4484817 | 4503282 | 18466 | Serratia marcescens WW4, complete genome | 1e-30 | 143 | BLASTN svg | BLASTP svg |
NC_004431:3409389* | 3409389 | 3494936 | 85548 | Escherichia coli CFT073, complete genome | 9e-22 | 113 | BLASTN svg | BLASTP svg |
NC_011751:3453683 | 3453683 | 3512383 | 58701 | Escherichia coli UMN026 chromosome, complete genome | 9e-22 | 113 | BLASTN svg | BLASTP svg |
NC_010634:2894631 | 2894631 | 2935847 | 41217 | Yersinia pseudotuberculosis PB1/+, complete genome | 3e-18 | 101 | BLASTN svg | BLASTP svg |
NC_006155:2979500 | 2979500 | 3016496 | 36997 | Yersinia pseudotuberculosis IP 32953, complete genome | 3e-18 | 101 | BLASTN svg | BLASTP svg |
NC_004337:3590323* | 3590323 | 3952993 | 362671 | Shigella flexneri 2a str. 301, complete genome | 5e-17 | 97.6 | BLASTN svg | BLASTP svg |
NC_010465:804249 | 804249 | 841088 | 36840 | Yersinia pseudotuberculosis YPIII, complete genome | 8e-13 | 83.8 | BLASTN svg | BLASTP svg |
NC_008149:3648139 | 3648139 | 3682802 | 34664 | Yersinia pestis Nepal516, complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_008150:3711953 | 3711953 | 3747318 | 35366 | Yersinia pestis Antiqua, complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_010465:2282874 | 2282874 | 2309258 | 26385 | Yersinia pseudotuberculosis YPIII, complete genome | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_003143:1880000 | 1880000 | 1902325 | 22326 | Yersinia pestis CO92, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_005810:1976000 | 1976000 | 1998607 | 22608 | Yersinia pestis biovar Microtus str. 91001, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_010159:2955562 | 2955562 | 2978457 | 22896 | Yersinia pestis Angola, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_013961:3083816 | 3083816 | 3106099 | 22284 | Erwinia amylovora, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_020063:3690308* | 3690308 | 3753636 | 63329 | Enterobacteriaceae bacterium strain FGI 57, complete genome | 8e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_010465:429095 | 429095 | 452493 | 23399 | Yersinia pseudotuberculosis YPIII, complete genome | 5e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_012912:4071859 | 4071859 | 4117551 | 45693 | Dickeya zeae Ech1591, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_004463:2262467 | 2262467 | 2311742 | 49276 | Bradyrhizobium japonicum USDA 110, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |