Pre_GI: BLASTP Hits

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Query: NC_006155:456000:470331 Yersinia pseudotuberculosis IP 32953, complete genome

Start: 470331, End: 470406, Length: 76

Host Lineage: Yersinia pseudotuberculosis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a fully virulent serotype I strain isolated from a human patient. Environmental bacterium that causes gastrointestinal disease. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This organism was first isolated in 1883 by Malassez and Vignal and is termed pseudotuberculosis since it causes lesions in the lung that are similar to those observed during tuberculosis infection. It is ubiquitous in the environment and is a food and waterborne pathogen that affects animals as well as humans by causing gastroenteritis like Yersinia enterocolitica.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
CU928145:4792703:480798948079894808237249Escherichia coli 55989 chromosome, complete genomehypothetical protein1e-0651.6
NC_011748:4792703:480798948079894808237249Escherichia coli 55989, complete genomehypothetical protein1e-0651.6
NC_011748:4792703:48081234808123480819876Escherichia coli 55989, complete genometRNA-Phe2e-0651.2
NC_009832:426993:45128445128445135976Serratia proteamaculans 568, complete genometRNA-Phe2e-0651.2
NC_010465:4222586:42257414225741422581676Yersinia pseudotuberculosis YPIII, complete genometRNA-Phe2e-0651.2
NC_014306:4106569:41122414112241411231676Erwinia billingiae Eb661, complete genometRNA-Phe2e-0651.2
NC_004431:4955658:49715854971585497166076Escherichia coli CFT073, complete genometRNA-Phe2e-0651.2
NC_004337:3049118:30524643052464305253976Shigella flexneri 2a str. 301, complete genometRNA-Phe2e-0651.2
NC_012880:3529017:35317643531764353183976Dickeya dadantii Ech703, complete genometRNA-Phe2e-0651.2
NC_008149:3790897:37968023796802379687776Yersinia pestis Nepal516, complete genometRNA-Phe2e-0651.2
NC_011750:3545466:35454663545466354554176Escherichia coli IAI39 chromosome, complete genometRNA-Phe2e-0651.2
NC_003143:1059580:10639261063926106400176Yersinia pestis CO92, complete genometRNA-Phe2e-0651.2
NC_010694:3178842:31862193186219318629476Erwinia tasmaniensis, complete genometRNA-Phe2e-0651.2
NC_012912:4012112:40164284016428401650376Dickeya zeae Ech1591, complete genometRNA-Phe2e-0651.2
NC_003198:4513900:45430734543073454314876Salmonella enterica subsp. enterica serovar Typhi str. CT18,tRNA-Phe2e-0651.2
AP010958:5090696:51198835119883511995876Escherichia coli O103:H2 str. 12009 DNA, complete genometRNA-Phe2e-0651.2
NC_009648:3720000:37210153721015372109076Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genometRNA-Phe2e-0651.2
NC_013592:956829:97854997854997862476Dickeya dadantii Ech586, complete genometRNA-Phe2e-0651.2
NC_003198:3126548:31325303132530313260576Salmonella enterica subsp. enterica serovar Typhi str. CT18,tRNA-Phe2e-0651.2
NC_004741:3041294:30446403044640304471576Shigella flexneri 2a str. 2457T, complete genometRNA-Phe2e-0651.2
NC_008149:3556999:35598303559830355990576Yersinia pestis Nepal516, complete genometRNA-Phe2e-0651.2
NC_020260:263528:28255228255228262776Cronobacter sakazakii Sp291, complete genometRNA-Phe2e-0651.2
NC_006905:4486433:45012804501280450135576Salmonella enterica subsp. enterica serovar Choleraesuis strtRNA-Phe2e-0651.2
NC_005810:515744:52978252978252985776Yersinia pestis biovar Microtus str. 91001, complete genometRNA-Phe2e-0651.2
CU928145:4792703:48081234808123480819876Escherichia coli 55989 chromosome, complete genometRNA-Phe2e-0651.2
NC_015566:4547702:45522054552205455228076Serratia sp. AS12 chromosome, complete genometRNA-Phe2e-0651.2
NC_013961:3269368:32749873274987327506276Erwinia amylovora, complete genometRNA-Phe2e-0651.2
NC_014500:1066911:10884931088493108856876Dickeya dadantii 3937 chromosome, complete genometRNA-Phe2e-0651.2
NC_009832:4482500:44865934486593448666876Serratia proteamaculans 568, complete genometRNA-Phe2e-0651.2
NC_020064:3998715:40066134006613400668876Serratia marcescens FGI94, complete genometRNA-Phe2e-0651.2
NC_017265:644384:64811964811964819476Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,tRNA-Phe2e-0651.2
NC_013353:5090696:51198835119883511995876Escherichia coli O103:H2 str. 12009, complete genometRNA-Phe2e-0651.2
NC_013364:3701895:37052413705241370531676Escherichia coli O111:H- str. 11128, complete genometRNA-Phe2e-0651.2
NC_014618:4312295:43180574318057431813276Enterobacter cloacae SCF1 chromosome, complete genometRNA-Phe2e-0651.2
NC_016832:3100683:31066653106665310674076Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,tRNA-Phe2e-0651.2
NC_016845:4498097:45027714502771450284676Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,tRNA-Phe2e-0651.2
NC_016856:4563435:45794104579410457948576Salmonella enterica subsp. enterica serovar Typhimurium str. 14028StRNA-Phe2e-0651.2
NC_016857:4573173:45871614587161458723676Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74tRNA-Phe2e-0651.2
NC_016860:4649274:46639734663973466404876Salmonella enterica subsp. enterica serovar Typhimurium strtRNA-Phe2e-0651.2
NC_017046:4571833:45858214585821458589676Salmonella enterica subsp. enterica serovar Typhimurium str. 798tRNA-Phe2e-0651.2
NC_017154:331921:34514534514534522076Yersinia pestis D106004 chromosome, complete genometRNA-Phe2e-0651.2
NC_017168:751078:75698375698375705876Yersinia pestis A1122 chromosome, complete genometRNA-Phe2e-0651.2
NC_011745:4862218:48811994881199488127476Escherichia coli ED1a chromosome, complete genometRNA-Phe2e-0651.2
NC_009381:4169353:41752584175258417533376Yersinia pestis Pestoides F chromosome, complete genometRNA-Phe2e-0651.2
NC_013508:275081:28806128806128813676Edwardsiella tarda EIB202, complete genometRNA-Phe2e-0651.2
NC_004631:3112043:31180253118025311810076Salmonella enterica subsp. enterica serovar Typhi Ty2, completetRNA-Phe2e-0651.2
NC_013592:577831:59201759201759209276Dickeya dadantii Ech586, complete genometRNA-Phe2e-0651.2
NC_021066:3703725:37102143710214371028976Raoultella ornithinolytica B6, complete genometRNA-Phe2e-0651.2
NC_006155:3805640:38099953809995381007076Yersinia pseudotuberculosis IP 32953, complete genometRNA-Phe2e-0651.2
NC_012880:3982383:39867983986798398687376Dickeya dadantii Ech703, complete genometRNA-Phe2e-0651.2
NC_021066:4906239:49221464922146492222176Raoultella ornithinolytica B6, complete genometRNA-Phe2e-0651.2
NC_020211:379000:39730939730939738476Serratia marcescens WW4, complete genometRNA-Phe2e-0651.2
NC_020211:4484817:44902464490246449032176Serratia marcescens WW4, complete genometRNA-Phe2e-0651.2
NC_015663:1902344:19242841924284192435976Enterobacter aerogenes KCTC 2190 chromosome, complete genometRNA-Phe2e-0651.2
NC_008253:3122148:31280843128084312815976Escherichia coli 536, complete genometRNA-Phe2e-0651.2
NC_010634:3720214:37230453723045372312076Yersinia pseudotuberculosis PB1/+, complete genometRNA-Phe2e-0651.2
NC_007712:532500:54601854601854609376Sodalis glossinidius str. 'morsitans', complete genometRNA-Phe2e-0651.2
NC_013282:3719500:37230503723050372312273Cronobacter turicensis, complete genometRNA-Phe9e-0648.9
NC_009792:4017510:40235124023512402358473Citrobacter koseri ATCC BAA-895, complete genometRNA-Phe9e-0648.9
NC_010067:3204682:32071143207114320718673Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completetRNA-Phe9e-0648.9
NC_004088:3689000:36920043692004369207673Yersinia pestis KIM, complete genometRNA-Phe9e-0648.9
NC_006511:3079512:30855053085505308557773Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCtRNA-Phe9e-0648.9
NC_010554:2789722:27936902793690279376273Proteus mirabilis HI4320, complete genometRNA-Phe9e-0648.9
NC_009778:259241:28743528743528750773Enterobacter sakazakii ATCC BAA-894, complete genometRNA-Phe9e-0648.9
NC_010067:4418000:44380464438046443811873Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completetRNA-Phe9e-0648.9
NC_011147:3075186:30811793081179308125173Salmonella enterica subsp. enterica serovar Paratyphi A strtRNA-Phe9e-0648.9
NC_011147:4297513:43120084312008431208073Salmonella enterica subsp. enterica serovar Paratyphi A strtRNA-Phe9e-0648.9
NC_020418:1397112:14180531418053141812573Morganella morganii subsp. morganii KT, complete genometRNA-Phe9e-0648.9
NC_017328:3088907:30922533092253309232573Shigella flexneri 2002017 chromosome, complete genometRNA-Phe9e-0648.9
NC_016831:4367000:43799254379925437999773Salmonella enterica subsp. enterica serovar Gallinarum/pullorumtRNA-Phe9e-0648.9
NC_016810:4573172:45871634587163458723573Salmonella enterica subsp. enterica serovar Typhimurium strtRNA-Phe9e-0648.9
NC_015761:4188250:42151624215162421523473Salmonella bongori NCTC 12419, complete genometRNA-Phe9e-0648.9
NC_015761:2982000:29820182982018298209073Salmonella bongori NCTC 12419, complete genometRNA-Phe9e-0648.9
NC_011294:4409137:44218764421876442194873Salmonella enterica subsp. enterica serovar Enteritidis strtRNA-Phe9e-0648.9
NC_011274:4385039:43997804399780439985273Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91tRNA-Phe9e-0648.9
NC_013716:5201097:52717155271715527178773Citrobacter rodentium ICC168, complete genometRNA-Phe9e-0648.9