Pre_GI: BLASTP Hits

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Query: NC_006155:4210606:4216920 Yersinia pseudotuberculosis IP 32953, complete genome

Start: 4216920, End: 4217786, Length: 867

Host Lineage: Yersinia pseudotuberculosis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a fully virulent serotype I strain isolated from a human patient. Environmental bacterium that causes gastrointestinal disease. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This organism was first isolated in 1883 by Malassez and Vignal and is termed pseudotuberculosis since it causes lesions in the lung that are similar to those observed during tuberculosis infection. It is ubiquitous in the environment and is a food and waterborne pathogen that affects animals as well as humans by causing gastroenteritis like Yersinia enterocolitica.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004088:179775:185744185744186619876Yersinia pestis KIM, complete genometranscriptional regulator8e-146516
NC_005810:4381182:438748643874864388361876Yersinia pestis biovar Microtus str. 91001, complete genomeLysR family transcriptional regulator8e-146516
NC_008150:4140804:415171141517114152577867Yersinia pestis Antiqua, complete genomeputative lysR-family transcriptional regulatory protein1e-145515
NC_003143:4105754:411667141166714117537867Yersinia pestis CO92, complete genomeputative lysR-family transcriptional regulatory protein1e-145515
NC_010159:1208699:121501812150181215884867Yersinia pestis Angola, complete genometranscriptional regulator, LysR family1e-145515
NC_008149:3966586:397256439725643973430867Yersinia pestis Nepal516, complete genomelysR-family transcriptional regulatory protein1e-145515
NC_009381:321577:332495332495333361867Yersinia pestis Pestoides F chromosome, complete genomeLysR family transcriptional regulator1e-145515
NC_017168:1729922:174083917408391741705867Yersinia pestis A1122 chromosome, complete genomeLysR family transcriptional regulator1e-145515
NC_017265:4171500:417670041767004177566867Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative lysR-family transcriptional regulatory protein1e-145515
NC_010634:4150763:415713141571314157943813Yersinia pseudotuberculosis PB1/+, complete genomeLysR family transcriptional regulator1e-135482
NC_010465:522649:533546533546534358813Yersinia pseudotuberculosis YPIII, complete genometranscriptional regulator, LysR family5e-135480
NC_017154:3997810:400872740087274009539813Yersinia pestis D106004 chromosome, complete genomelysR-family transcriptional regulatory protein5e-135480
NC_017160:3986844:399287639928763993688813Yersinia pestis D182038 chromosome, complete genomelysR-family transcriptional regulatory protein5e-135480
NC_014029:4057696:406861340686134069383771Yersinia pestis Z176003 chromosome, complete genomelysR-family transcriptional regulatory protein5e-126450
NC_009708:483253:494332494332495219888Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeLysR family transcriptional regulator3e-118424
NC_015224:4028150:403274040327404033606867Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative lysR-family transcriptional regulator3e-85315
NC_014228:2270000:2290027229002722910401014Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein6e-1374.7
NC_008150:3015000:302406730240673024978912Yersinia pestis Antiqua, complete genomeputative LysR-family transcriptional regulatory protein4e-1065.9
NC_004088:1075454:108528210852821086193912Yersinia pestis KIM, complete genomeLysR-type transcriptional regulatory protein4e-1065.9
NC_005810:754340:765018765018765929912Yersinia pestis biovar Microtus str. 91001, complete genomeLysR family transcriptional regulator4e-1065.9
NC_006155:1074298:108492010849201085831912Yersinia pseudotuberculosis IP 32953, complete genomeputative LysR-family transcriptional regulatory protein4e-1065.9
NC_003143:3583468:359238935923893593300912Yersinia pestis CO92, complete genomeputative LysR-family transcriptional regulatory protein4e-1065.9
NC_008149:1002453:101228110122811013192912Yersinia pestis Nepal516, complete genomeLysR-family transcriptional regulatory protein4e-1065.9
NC_009381:3228500:323665332366533237564912Yersinia pestis Pestoides F chromosome, complete genomeLysR family transcriptional regulator4e-1065.9
NC_009708:3542336:355125635512563552167912Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeLysR family transcriptional regulator4e-1065.9
NC_017168:2158839:216866721686672169578912Yersinia pestis A1122 chromosome, complete genomeputative LysR family transcriptional regulator4e-1065.9
NC_017265:3375463:338472933847293385640912Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative LysR-family transcriptional regulatory protein4e-1065.9
NC_016641:2291363:229276922927692293662894Paenibacillus terrae HPL-003 chromosome, complete genomeLysR family transcriptional regulator6e-0961.6
NC_014118:1528851:154451915445191545472954Burkholderia sp. CCGE1002 chromosome chromosome 2, completetranscriptional regulator, LysR family1e-0860.5
NC_015224:2618192:263074726307472631607861Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,LysR family transcriptional regulator2e-0860.1
NC_008800:2448583:246144624614462462306861Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,LysR family transcriptional regulator2e-0860.1
NC_017154:2430093:243630224363022437162861Yersinia pestis D106004 chromosome, complete genomeLysR-family transcriptional regulatory protein2e-0860.1
NC_010634:2376245:238449223844922385352861Yersinia pseudotuberculosis PB1/+, complete genomeLysR family transcriptional regulator2e-0860.1
NC_005810:2180303:218854021885402189400861Yersinia pestis biovar Microtus str. 91001, complete genomeLysR family transcriptional regulator2e-0860.1
NC_004088:2366000:237994823799482380808861Yersinia pestis KIM, complete genomehypothetical protein2e-0860.1
NC_003143:2433190:243939924393992440259861Yersinia pestis CO92, complete genomeputative LysR-family transcriptional regulatory protein2e-0860.1
NC_008149:1842500:184801318480131848873861Yersinia pestis Nepal516, complete genomeLysR-family transcriptional regulatory protein2e-0860.1
NC_008150:1705152:171136117113611712221861Yersinia pestis Antiqua, complete genomeputative LysR-family transcriptional regulatory protein2e-0860.1
NC_006155:2461262:246669524666952467555861Yersinia pseudotuberculosis IP 32953, complete genomeputative LysR-family transcriptional regulatory protein2e-0860.1
NC_017265:2087487:210164521016452102505861Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative LysR-family transcriptional regulatory protein2e-0860.1
NC_009832:2460027:247533424753342476263930Serratia proteamaculans 568, complete genometranscriptional regulator, LysR family2e-0859.7
NC_021182:401129:405891405891406796906Clostridium pasteurianum BC1, complete genometranscriptional regulator2e-0859.7
NC_010159:2440947:245229424522942452923630Yersinia pestis Angola, complete genome3e-0859.3
NC_013971:3117000:313444531344453135245801Erwinia amylovora ATCC 49946 chromosome, complete genomeLysR family transcriptional regulator5e-0858.5
NC_013961:629307:636056636056636856801Erwinia amylovora, complete genometranscriptional regulator of levansucrase5e-0858.5
NC_014618:4657719:468652846865284687457930Enterobacter cloacae SCF1 chromosome, complete genomeLysR family transcriptional regulator5e-0858.5
NC_002488:1638946:164242216424221642814393Xylella fastidiosa 9a5c, complete genomehypothetical protein1e-0757.4
NC_015136:912276:926116926116927021906Burkholderia sp. CCGE1001 chromosome 1, complete sequenceLysR family transcriptional regulator1e-0757
NC_010676:3009980:301155930115593012446888Burkholderia phytofirmans PsJN chromosome 2, complete sequencetranscriptional regulator, LysR family2e-0756.6
NC_014650:475662:500063500063500962900Geobacillus sp. Y4.1MC1 chromosome, complete genomeLysR family transcriptional regulator8e-0754.7
NC_015556:1899850:192093919209391921838900Pseudomonas fulva 12-X chromosome, complete genometranscriptional regulator, LysR family7e-0754.7
NC_020418:1364943:136860713686071369488882Morganella morganii subsp. morganii KT, complete genometranscriptional regulator, LysR family9e-0754.3
NC_010170:4409683:441792844179284418830903Bordetella petrii, complete genometranscriptional regulator, LysR-family9e-0754.3
NC_008146:1577604:160510616051061606014909Mycobacterium sp. MCS, complete genometranscriptional regulator, LysR family1e-0654.3
NC_015957:2781740:280415128041512805059909Streptomyces violaceusniger Tu 4113 chromosome, complete genomeLysR family transcriptional regulator1e-0654.3
NC_007434:1923000:194845219484521949423972Burkholderia pseudomallei 1710b chromosome I, complete sequencetranscriptional regulator, LysR family1e-0653.9
NC_008392:666000:672108672108673040933Burkholderia cepacia AMMD chromosome 3, complete sequencetranscriptional regulator, LysR family1e-0653.9
NC_015275:3761889:376374637637463764609864Clostridium lentocellum DSM 5427 chromosome, complete genometranscriptional regulator, LysR family1e-0653.9
NC_016077:1876119:187611918761191877003885Acidaminococcus intestini RyC-MR95 chromosome, complete genometranscriptional regulator2e-0653.5
NC_016048:3899878:390790339079033908847945Oscillibacter valericigenes Sjm18-20, complete genomeputative LysR family transcriptional regulator2e-0653.5
NC_016616:2219486:224051722405172241470954Dechlorosoma suillum PS chromosome, complete genometranscriptional regulator2e-0653.5
NC_015137:2616222:262169326216932622598906Burkholderia sp. CCGE1001 chromosome 2, complete sequenceLysR family transcriptional regulator2e-0653.5
NC_015851:10915:301253012531045921Acidithiobacillus caldus SM-1 megaplasmid, complete sequenceLysR family transcriptional regulator2e-0653.1
NC_014638:1139824:114037811403781141301924Bifidobacterium bifidum PRL2010 chromosome, complete genomeLysR family transcriptional regulator2e-0653.1
NC_008346:1047500:106353810635381064461924Syntrophomonas wolfei subsp. wolfei str. Goettingen, completeLysR-type transcriptional regulator2e-0653.1
NC_009074:1555500:157183415718341572727894Burkholderia pseudomallei 668 chromosome I, complete sequenceTranscriptional regulator3e-0652.8
NC_006350:2427000:242741324274132428306894Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative LysR-family transcriptional regulator3e-0652.8
NC_009076:1566500:158154315815431582436894Burkholderia pseudomallei 1106a chromosome I, complete sequencetranscriptional regulator, LysR family3e-0652.8
NC_020064:3998715:401199840119984012903906Serratia marcescens FGI94, complete genometranscriptional regulator3e-0652.8
NC_012660:5121219:513206351320635132968906Pseudomonas fluorescens SBW25 chromosome, complete genomeputative LysR family regulatory protein4e-0652.4
NC_016514:1183356:120316712031671204048882Enterobacter cloacae EcWSU1 chromosome, complete genomeHTH-type transcriptional regulator BudR4e-0652.4
NC_011283:785973:804836804836805735900Klebsiella pneumoniae 342 chromosome, complete genomeLysR family transcriptional regulator4e-0652.4
NC_007948:4646344:466732446673244668238915Polaromonas sp. JS666, complete genometranscriptional regulator, LysR family4e-0652.4
NC_014121:3188928:319290931929093193790882Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeLysR family transcriptional regulator3e-0652.4
NC_007951:3631772:364615936461593647070912Burkholderia xenovorans LB400 chromosome 1, complete sequenceTranscriptional regulator, LysR family5e-0652
NC_013592:3212834:322544532254453226407963Dickeya dadantii Ech586, complete genometranscriptional regulator, LysR family5e-0652
NC_016582:93754:102711102711103661951Streptomyces bingchenggensis BCW-1 chromosome, complete genomeLysR family transcriptional regulator6e-0651.6
NC_011662:2320100:233568923356892336609921Thauera sp. MZ1T, complete genometranscriptional regulator, LysR family6e-0651.6
NC_010170:1324758:133532013353201336210891Bordetella petrii, complete genometranscriptional regulator, LysR-family6e-0651.6
NC_016590:1380092:138241113824111383337927Burkholderia sp. YI23 chromosome 3, complete sequenceLysR family transcriptional regulator8e-0651.2
NC_015711:7905360:790987079098707910784915Myxococcus fulvus HW-1 chromosome, complete genomeLysR family transcriptional regulator9e-0651.2
NC_021066:1778000:177836617783661779265900Raoultella ornithinolytica B6, complete genomeputative LysR family transcriptional regulator1e-0550.8