Pre_GI: BLASTN Hits

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Query: NC_005363:3562205 Bdellovibrio bacteriovorus HD100, complete genome

Start: 3562205, End: 3593099, Length: 30895

Host Lineage: Bdellovibrio bacteriovorus; Bdellovibrio; Bdellovibrionaceae; Bdellovibrionales; Proteobacteria; Bacteria

General Information: This organism is unique in that it is a bacteriolytic microbe that preys on other gram negative bacteria. It is found throughout soil, sewage, and aquatic environments, and is often associated with biofilms. This organism has a biphasic lifestyle which consists of a free living and motile phase, and an attack phase where the bacterium attaches to a host cell, burrows into the periplasm, and begins to degrade the host from the inside out. The organism sheds its flagellum once it makes irreversible contact with the host, and when it is inside, begins to form a bdelloplast, resulting in degradation of the host cell inner membrane and alteration of its peptidoglycan layer, resulting in a spherical cell. The Bdellovibrio cell elongates until it forms a long coiled structure which then divides, forming many flagellated progeny which continue the degradation of the host cell to propagate the life cycle. The genome encodes a large number of degradative and lytic enzymes which are used to degrade the host organism. The organism has numerous deficiencies in its amino acid biosynthetic pathways, suggesting it utilizes prey metabolites for protein synthesis.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_007005:45158534515853454582229970Pseudomonas syringae pv. syringae B728a, complete genome7e-20107BLASTN svgBLASTP svg
NC_015379:25052332505233254669441462Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,1e-1593.7BLASTN svgBLASTP svg
NC_012796:12950012950014715917660Desulfovibrio magneticus RS-1, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_003295:19935419935423823938886Ralstonia solanacearum GMI1000, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_004578:1719849*1719849174221722369Pseudomonas syringae pv. tomato str. DC3000, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002927:37168943716894377039253499Bordetella bronchiseptica RB50, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010524:1005355*1005355103237727023Leptothrix cholodnii SP-6, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_012440:609659*60965963380724149Persephonella marina EX-H1, complete genome4e-0661.9BLASTN svgBLASTP svg