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Query: NC_005244:37546 Pseudomonas sp. ND6 plasmid pND6-1, complete sequence

Start: 37546, End: 60151, Length: 22606

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Common environmental bacterium. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. In the latter form the single cell can display an extremely high motility due to its polar flagella. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Typically they are plant pathogens, although several strains are pathogenic to humans. These bacteria share a high degree of homology to Pseudomonas aeruginosa strains. However, key virulence factors like certain exotoxin genes and type III secretion systems are absent, which makes these bacteria non-pathogenic in nature. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008781:26117022611702264863036929Polaromonas naphthalenivorans CJ2, complete genome0819BLASTN svgBLASTP svg
NC_015556:11885001188500122602637527Pseudomonas fulva 12-X chromosome, complete genome0791BLASTN svgBLASTP svg
NC_008782:32520923252092327781225721Acidovorax sp. JS42, complete genome5e-137496BLASTN svgBLASTP svg
NC_008463:52469545246954530671059757Pseudomonas aeruginosa UCBPP-PA14, complete genome2e-118434BLASTN svgBLASTP svg
NC_004129:53738865373886545259978714Pseudomonas fluorescens Pf-5, complete genome3e-89337BLASTN svgBLASTP svg
NC_005773:1333863*1333863135559921737Pseudomonas syringae pv. phaseolicola 1448A, complete genome1e-88335BLASTN svgBLASTP svg
NC_020209:19495001949500197652927030Pseudomonas poae RE*1-1-14, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_007005:3414579*3414579344125226674Pseudomonas syringae pv. syringae B728a, complete genome2e-0765.9BLASTN svgBLASTP svg