Pre_GI: BLASTP Hits

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Query: NC_005140:960261:965796 Vibrio vulnificus YJ016 chromosome II, complete sequence

Start: 965796, End: 966323, Length: 528

Host Lineage: Vibrio vulnificus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a Biotype 1 hospital isolate from Taiwan. It contains larger chromosomes and >1000 genes as compared to Vibrio cholerae and contains a conjugative plasmid, pYJ016. There are numerous virulence factors including a cytolysin, protease, capsular polysaccharide as well as iron-uptake systems encoded in the genome. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Organisms of this species are opportunistic pathogens that can attack immunocompromised patients and causes gastroenteritis (inflammation of mucous membranes of stomach and intestine), wound infections, and primary septicemia (spread of the organism through the blood). This organism is the major cause of death from eating raw oysters, especially in people with liver damage. It only affects humans and other primates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008260:2021162:202730720273072027867561Alcanivorax borkumensis SK2, complete genomehypothetical protein8e-1683.2
NC_020133:142790:144147144147144713567Mycobacterium liflandii 128FXT, complete genomeTranscriptional regulator2e-1478.6
NC_015460:2403004:240300424030042403552549Gallibacterium anatis UMN179 chromosome, complete genomelineage-specific thermal regulator protein7e-1476.6
NC_013203:1406158:142388714238871424444558Atopobium parvulum DSM 20469, complete genometranscriptional regulator, PadR-like family2e-1272
NC_009848:775000:794119794119794676558Bacillus pumilus SAFR-032, complete genometranscriptional regulator4e-1063.9
NC_011830:923424:933829933829934746918Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, PadR-like family2e-0858.9
NC_020302:146807:160910160910161482573Corynebacterium halotolerans YIM 70093 = DSM 44683, completePadR DNA-binding transcription regulator5e-0857.4
NC_016048:2678205:269801326980132698378366Oscillibacter valericigenes Sjm18-20, complete genomePadR family transcriptional regulator4e-0857.4
NC_019908:323375:339145339145339681537Brachyspira pilosicoli P43/6/78 chromosome, complete genomePadR-like family transcriptional regulator5e-0857
NC_018607:1648607:165434816543481654884537Brachyspira pilosicoli B2904 chromosome, complete genomePadR-like family transcriptional regulator5e-0857
NC_014330:313813:319058319058319594537Brachyspira pilosicoli 95/1000 chromosome, complete genomePadR-like family transcriptional regulator5e-0857
NC_018604:1137797:115229811522981152834537Brachyspira pilosicoli WesB complete genomePadR-like family transcriptional regulator7e-0856.6
NC_011831:1693935:169472716947271695275549Chloroflexus aggregans DSM 9485, complete genometranscriptional regulator, PadR-like family7e-0753.5
NC_014328:1739578:174435717443571744917561Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative PadR family transcriptional regulator3e-0651.2
NC_011772:1684404:168998316899831690522540Bacillus cereus G9842, complete genometranscriptional repressor PadR3e-0651.2