Pre_GI: BLASTN Hits

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Query: NC_005126:4333767 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 4333767, End: 4395099, Length: 61333

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_005126:16138181613818165143837621Photorhabdus luminescens subsp. laumondii TTO1, complete genome015370BLASTN svgBLASTP svg
NC_005126:12650711265071131880053730Photorhabdus luminescens subsp. laumondii TTO1, complete genome014030BLASTN svgBLASTP svg
NC_005126:42105004210500424678336284Photorhabdus luminescens subsp. laumondii TTO1, complete genome011410BLASTN svgBLASTP svg
NC_005126:58900058900061853029531Photorhabdus luminescens subsp. laumondii TTO1, complete genome08120BLASTN svgBLASTP svg
NC_005126:13154741315474135150136028Photorhabdus luminescens subsp. laumondii TTO1, complete genome08112BLASTN svgBLASTP svg
NC_012962:3864000*3864000389221428215Photorhabdus asymbiotica, complete genome06211BLASTN svgBLASTP svg
NC_012962:16616831661683171390552223Photorhabdus asymbiotica, complete genome03697BLASTN svgBLASTP svg
NC_012962:48489948489951520630308Photorhabdus asymbiotica, complete genome03612BLASTN svgBLASTP svg
NC_012962:25877562587756263945151696Photorhabdus asymbiotica, complete genome03594BLASTN svgBLASTP svg
NC_012962:34999003499900355871558816Photorhabdus asymbiotica, complete genome03511BLASTN svgBLASTP svg
NC_005126:49196894919689494365923971Photorhabdus luminescens subsp. laumondii TTO1, complete genome02964BLASTN svgBLASTP svg
NC_005126:34965834965840029550638Photorhabdus luminescens subsp. laumondii TTO1, complete genome02964BLASTN svgBLASTP svg
NC_005126:12230421223042125359930558Photorhabdus luminescens subsp. laumondii TTO1, complete genome02960BLASTN svgBLASTP svg
NC_005126:4824500*4824500485430329804Photorhabdus luminescens subsp. laumondii TTO1, complete genome02141BLASTN svgBLASTP svg
NC_012962:39337153933715398542551711Photorhabdus asymbiotica, complete genome2e-154555BLASTN svgBLASTP svg
NC_014228:28835002883500292066537166Xenorhabdus nematophila ATCC 19061, complete genome4e-149537BLASTN svgBLASTP svg
NC_012912:21741832174183220033726155Dickeya zeae Ech1591, complete genome4e-137498BLASTN svgBLASTP svg
NC_015061:38019273801927382632824402Rahnella sp. Y9602 chromosome, complete genome2e-108402BLASTN svgBLASTP svg
NC_012214:1267589*1267589129886031272Erwinia pyrifoliae Ep1/96, complete genome8e-86327BLASTN svgBLASTP svg
NC_005126:5188976*5188976521454825573Photorhabdus luminescens subsp. laumondii TTO1, complete genome3e-79305BLASTN svgBLASTP svg
NC_012962:35680463568046362047652431Photorhabdus asymbiotica, complete genome4e-72281BLASTN svgBLASTP svg
NC_005126:14250014250016059218093Photorhabdus luminescens subsp. laumondii TTO1, complete genome9e-61244BLASTN svgBLASTP svg
NC_005126:36304593630459368847858020Photorhabdus luminescens subsp. laumondii TTO1, complete genome8e-55224BLASTN svgBLASTP svg
NC_012962:10415181041518106637824861Photorhabdus asymbiotica, complete genome2e-52216BLASTN svgBLASTP svg
NC_005126:34853303485330350809922770Photorhabdus luminescens subsp. laumondii TTO1, complete genome2e-52216BLASTN svgBLASTP svg
NC_012962:44270004427000445406927070Photorhabdus asymbiotica, complete genome1e-50210BLASTN svgBLASTP svg
NC_012962:10681021068102112169753596Photorhabdus asymbiotica, complete genome1e-50210BLASTN svgBLASTP svg
NC_005126:44239644423964444767223709Photorhabdus luminescens subsp. laumondii TTO1, complete genome5e-50208BLASTN svgBLASTP svg
NC_005126:48575004857500488024422745Photorhabdus luminescens subsp. laumondii TTO1, complete genome8e-49204BLASTN svgBLASTP svg
NC_012962:26395002639500266574326244Photorhabdus asymbiotica, complete genome3e-48202BLASTN svgBLASTP svg
NC_008309:18278091827809185114023332Haemophilus somnus 129PT, complete genome1e-47200BLASTN svgBLASTP svg
NC_012962:30600633060063308387423812Photorhabdus asymbiotica, complete genome5e-47198BLASTN svgBLASTP svg
NC_005126:15490661549066157724728182Photorhabdus luminescens subsp. laumondii TTO1, complete genome5e-47198BLASTN svgBLASTP svg
NC_012962:13176021317602134444626845Photorhabdus asymbiotica, complete genome2e-46196BLASTN svgBLASTP svg
NC_005126:27569842756984277869021707Photorhabdus luminescens subsp. laumondii TTO1, complete genome2e-46196BLASTN svgBLASTP svg
NC_005126:38120543812054388079068737Photorhabdus luminescens subsp. laumondii TTO1, complete genome3e-45192BLASTN svgBLASTP svg
NC_005126:89242289242291989627475Photorhabdus luminescens subsp. laumondii TTO1, complete genome3e-42182BLASTN svgBLASTP svg
NC_012962:82090982090984059919691Photorhabdus asymbiotica, complete genome1e-41180BLASTN svgBLASTP svg
NC_012962:34636443463644349841134768Photorhabdus asymbiotica, complete genome2e-40176BLASTN svgBLASTP svg
NC_006300:60051660051663151030995Mannheimia succiniciproducens MBEL55E, complete genome4e-38168BLASTN svgBLASTP svg
NC_004547:38176563817656384109623441Erwinia carotovora subsp. atroseptica SCRI1043, complete genome7e-37165BLASTN svgBLASTP svg
NC_012962:30307263030726305134020615Photorhabdus asymbiotica, complete genome3e-36163BLASTN svgBLASTP svg
NC_012962:18270001827000184987822879Photorhabdus asymbiotica, complete genome4e-35159BLASTN svgBLASTP svg
NC_013421:385930*38593040496119032Pectobacterium wasabiae WPP163, complete genome2e-31147BLASTN svgBLASTP svg
NC_014541:643604*64360466816624563Ferrimonas balearica DSM 9799 chromosome, complete genome4e-29139BLASTN svgBLASTP svg
NC_007912:55600055600057912223123Saccharophagus degradans 2-40, complete genome4e-29139BLASTN svgBLASTP svg
NC_014228:35343783534378355604421667Xenorhabdus nematophila ATCC 19061, complete genome6e-28135BLASTN svgBLASTP svg
NC_014228:33915003391500342834536846Xenorhabdus nematophila ATCC 19061, complete genome6e-28135BLASTN svgBLASTP svg
NC_012962:86929586929589218422890Photorhabdus asymbiotica, complete genome6e-28135BLASTN svgBLASTP svg
NC_012912:22857782285778231059124814Dickeya zeae Ech1591, complete genome2e-24123BLASTN svgBLASTP svg
NC_012914:66183176618317664054022224Paenibacillus sp. JDR-2, complete genome1e-22117BLASTN svgBLASTP svg
NC_013166:24286324286326142618564Kangiella koreensis DSM 16069, complete genome1e-22117BLASTN svgBLASTP svg
NC_011149:31870223187022321200624985Salmonella enterica subsp. enterica serovar Agona str. SL483,8e-18101BLASTN svgBLASTP svg
NC_014228:3591758*3591758361409922342Xenorhabdus nematophila ATCC 19061, complete genome1e-1697.6BLASTN svgBLASTP svg
NC_012962:11890211189021120825819238Photorhabdus asymbiotica, complete genome1e-1697.6BLASTN svgBLASTP svg
NC_003198:3126548*3126548315161725070Salmonella enterica subsp. enterica serovar Typhi str. CT18,2e-1593.7BLASTN svgBLASTP svg
NC_004631:3112043*3112043313711225070Salmonella enterica subsp. enterica serovar Typhi Ty2, complete2e-1593.7BLASTN svgBLASTP svg
NC_012962:13646381364638138528120644Photorhabdus asymbiotica, complete genome2e-1593.7BLASTN svgBLASTP svg
NC_015731:20393172039317207331433998Nitrosomonas sp. Is79A3 chromosome, complete genome2e-1593.7BLASTN svgBLASTP svg
NC_003197:23274742327474236419536722Salmonella typhimurium LT2, complete genome8e-1591.7BLASTN svgBLASTP svg
NC_003198:22978372297837232227924443Salmonella enterica subsp. enterica serovar Typhi str. CT18,8e-1591.7BLASTN svgBLASTP svg
NC_004631:685357*68535771085325497Salmonella enterica subsp. enterica serovar Typhi Ty2, complete8e-1591.7BLASTN svgBLASTP svg
NC_006511:682863*68286370873225870Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC8e-1591.7BLASTN svgBLASTP svg
NC_010102:683444*68344472210838665Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,8e-1591.7BLASTN svgBLASTP svg
NC_011080:23426722342672236709924428Salmonella enterica subsp. enterica serovar Newport str. SL254,8e-1591.7BLASTN svgBLASTP svg
NC_011083:23750612375061241289137831Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,8e-1591.7BLASTN svgBLASTP svg
NC_003198:2453074*2453074247785124778Salmonella enterica subsp. enterica serovar Typhi str. CT18,5e-1385.7BLASTN svgBLASTP svg
NC_006511:3079512*3079512310454825037Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC5e-1385.7BLASTN svgBLASTP svg
NC_011149:22945002294500231681122312Salmonella enterica subsp. enterica serovar Agona str. SL483,5e-1385.7BLASTN svgBLASTP svg
NC_014228:1712339*1712339175523642898Xenorhabdus nematophila ATCC 19061, complete genome2e-1283.8BLASTN svgBLASTP svg
NC_012912:1788308*1788308184662758320Dickeya zeae Ech1591, complete genome2e-1283.8BLASTN svgBLASTP svg
NC_013716:31097003109700314990540206Citrobacter rodentium ICC168, complete genome8e-1281.8BLASTN svgBLASTP svg
NC_003919:20915472091547212059929053Xanthomonas axonopodis pv. citri str. 306, complete genome3e-1179.8BLASTN svgBLASTP svg
NC_012912:3853377*3853377389607042694Dickeya zeae Ech1591, complete genome5e-1075.8BLASTN svgBLASTP svg
NC_015566:46621714662171468741325243Serratia sp. AS12 chromosome, complete genome5e-1075.8BLASTN svgBLASTP svg
NC_014500:25258802525880254587920000Dickeya dadantii 3937 chromosome, complete genome2e-0973.8BLASTN svgBLASTP svg
NC_013716:5201097*5201097527659975503Citrobacter rodentium ICC168, complete genome2e-0973.8BLASTN svgBLASTP svg
NC_012779:2928000*2928000295428726288Edwardsiella ictaluri 93-146, complete genome2e-0973.8BLASTN svgBLASTP svg
NC_010080:1685280*1685280170653121252Lactobacillus helveticus DPC 4571, complete genome7e-0971.9BLASTN svgBLASTP svg
NC_004556:19339441933944195609922156Xylella fastidiosa Temecula1, complete genome7e-0971.9BLASTN svgBLASTP svg
NC_013421:2613137*2613137263682223686Pectobacterium wasabiae WPP163, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_014724:1731238*1731238175280921572Lactobacillus amylovorus GRL 1112 chromosome, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_015214:1700000*1700000172159921600Lactobacillus acidophilus 30SC chromosome, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_003143:64555964555966798722429Yersinia pestis CO92, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_003454:983681*983681100260518925Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete1e-0767.9BLASTN svgBLASTP svg
NC_004088:39559333955933398002524093Yersinia pestis KIM, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_005126:32049803204980322748422505Photorhabdus luminescens subsp. laumondii TTO1, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_005810:32383913238391326081922429Yersinia pestis biovar Microtus str. 91001, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_006155:41055424105542412736821827Yersinia pseudotuberculosis IP 32953, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_006905:23552902355290237961224323Salmonella enterica subsp. enterica serovar Choleraesuis str1e-0767.9BLASTN svgBLASTP svg
NC_007947:48582848582850833122504Methylobacillus flagellatus KT, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_020209:47504*4750412622978726Pseudomonas poae RE*1-1-14, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_018644:44610244610247041224311Alpha proteobacterium HIMB59 chromosome, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_010634:40457944045794406762021827Yersinia pseudotuberculosis PB1/+, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_010159:11012411101241112572024480Yersinia pestis Angola, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_008322:1898000*1898000192173523736Shewanella sp. MR-7, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_008150:35294303529430355292623497Yersinia pestis Antiqua, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_012779:3176820*3176820323178054961Edwardsiella ictaluri 93-146, complete genome5e-0765.9BLASTN svgBLASTP svg
NC_007508:20727382072738211001837281Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_009792:26887472688747271473325987Citrobacter koseri ATCC BAA-895, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_013592:21600002160000218320623207Dickeya dadantii Ech586, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_016010:20597912059791209065330863Xanthomonas axonopodis pv. citrumelo F1 chromosome, complete2e-0663.9BLASTN svgBLASTP svg
NC_003198:3924952*3924952395155226601Salmonella enterica subsp. enterica serovar Typhi str. CT18,7e-0661.9BLASTN svgBLASTP svg
NC_004129:195347*19534722067225326Pseudomonas fluorescens Pf-5, complete genome7e-0661.9BLASTN svgBLASTP svg
NC_004431:51233255123325514909025766Escherichia coli CFT073, complete genome7e-0661.9BLASTN svgBLASTP svg
NC_004631:3030580*3030580304986119282Salmonella enterica subsp. enterica serovar Typhi Ty2, complete7e-0661.9BLASTN svgBLASTP svg
NC_004631:3910451*3910451393705126601Salmonella enterica subsp. enterica serovar Typhi Ty2, complete7e-0661.9BLASTN svgBLASTP svg
NC_010465:17907391790739181268021942Yersinia pseudotuberculosis YPIII, complete genome7e-0661.9BLASTN svgBLASTP svg
NC_013592:45114784511478453986728390Dickeya dadantii Ech586, complete genome7e-0661.9BLASTN svgBLASTP svg
NC_014500:26164232616423264017523753Dickeya dadantii 3937 chromosome, complete genome7e-0661.9BLASTN svgBLASTP svg
NC_020063:974369743612048123046Enterobacteriaceae bacterium strain FGI 57, complete genome7e-0661.9BLASTN svgBLASTP svg
NC_003198:3042000*3042000306436622367Salmonella enterica subsp. enterica serovar Typhi str. CT18,7e-0661.9BLASTN svgBLASTP svg