Pre_GI: BLASTN Hits

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Query: NC_005126:3204980 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 3204980, End: 3227484, Length: 22505

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_012917:33787593378759339704718289Pectobacterium carotovorum subsp. carotovorum PC1, complete genome3e-163583BLASTN svgBLASTP svg
NC_003143:31912463191246321275521510Yersinia pestis CO92, complete genome1e-143517BLASTN svgBLASTP svg
NC_004088:15104671510467153309222626Yersinia pestis KIM, complete genome1e-143517BLASTN svgBLASTP svg
NC_005810:3021913*3021913304567123759Yersinia pestis biovar Microtus str. 91001, complete genome1e-143517BLASTN svgBLASTP svg
NC_008149:14403711440371146301222642Yersinia pestis Nepal516, complete genome1e-143517BLASTN svgBLASTP svg
NC_008150:25747942574794259632821535Yersinia pestis Antiqua, complete genome1e-143517BLASTN svgBLASTP svg
NC_010159:409500*40950045168242183Yersinia pestis Angola, complete genome1e-143517BLASTN svgBLASTP svg
NC_010465:14271701427170145224325074Yersinia pseudotuberculosis YPIII, complete genome1e-143517BLASTN svgBLASTP svg
NC_010634:32508103250810326864117832Yersinia pseudotuberculosis PB1/+, complete genome9e-139502BLASTN svgBLASTP svg
NC_006155:33333033333303335118117879Yersinia pseudotuberculosis IP 32953, complete genome9e-139502BLASTN svgBLASTP svg
NC_012214:12126161212616123625023635Erwinia pyrifoliae Ep1/96, complete genome4e-113416BLASTN svgBLASTP svg
NC_009800:26517302651730267629124562Escherichia coli HS, complete genome2e-108400BLASTN svgBLASTP svg
NC_015566:40490004049000406909920100Serratia sp. AS12 chromosome, complete genome1e-91345BLASTN svgBLASTP svg
NC_013956:31814213181421320344322023Pantoea ananatis LMG 20103 chromosome, complete genome1e-91345BLASTN svgBLASTP svg
NC_006905:26300002630000265438924390Salmonella enterica subsp. enterica serovar Choleraesuis str8e-90339BLASTN svgBLASTP svg
NC_004741:25930122593012261557622565Shigella flexneri 2a str. 2457T, complete genome2e-87331BLASTN svgBLASTP svg
NC_020064:35175003517500354133523836Serratia marcescens FGI94, complete genome4e-82313BLASTN svgBLASTP svg
NC_020063:11940001194000121676222763Enterobacteriaceae bacterium strain FGI 57, complete genome2e-78301BLASTN svgBLASTP svg
NC_012912:12956531295653131862422972Dickeya zeae Ech1591, complete genome4e-73283BLASTN svgBLASTP svg
NC_013282:3216226*3216226324341527190Cronobacter turicensis, complete genome2e-72281BLASTN svgBLASTP svg
NC_014500:35197223519722353859918878Dickeya dadantii 3937 chromosome, complete genome6e-69270BLASTN svgBLASTP svg
NC_007712:29780002978000300020322204Sodalis glossinidius str. 'morsitans', complete genome2e-62248BLASTN svgBLASTP svg
NC_006155:32379903237990326294924960Yersinia pseudotuberculosis IP 32953, complete genome1e-45192BLASTN svgBLASTP svg
NC_010634:31557413155741318046024720Yersinia pseudotuberculosis PB1/+, complete genome3e-43184BLASTN svgBLASTP svg
NC_015964:1389628*1389628140919019563Haemophilus parainfluenzae T3T1, complete genome4e-42180BLASTN svgBLASTP svg
NC_004347:34373693437369345870921341Shewanella oneidensis MR-1, complete genome1e-39172BLASTN svgBLASTP svg
NC_012779:30163273016327304089024564Edwardsiella ictaluri 93-146, complete genome2e-38168BLASTN svgBLASTP svg
NC_013456:30115183011518303472823211Vibrio sp. Ex25 chromosome 1, complete genome9e-31143BLASTN svgBLASTP svg
NC_015424:25107642510764253353522772Aeromonas veronii B565 chromosome, complete genome1e-29139BLASTN svgBLASTP svg
NC_012796:16006001600600163027529676Desulfovibrio magneticus RS-1, complete genome2e-28135BLASTN svgBLASTP svg
NC_006370:84720484720486812520922Photobacterium profundum SS9 chromosome 1, complete sequence9e-28133BLASTN svgBLASTP svg
NC_009348:19688261968826198790619081Aeromonas salmonicida subsp. salmonicida A449, complete genome1e-26129BLASTN svgBLASTP svg
NC_012880:37486653748665378917040506Dickeya dadantii Ech703, complete genome5e-23117BLASTN svgBLASTP svg
NC_002940:1234410*1234410125802923620Haemophilus ducreyi 35000HP, complete genome3e-21111BLASTN svgBLASTP svg
NC_013722:1816561*1816561186559949039Xanthomonas albilineans, complete genome5e-20107BLASTN svgBLASTP svg
NC_013416:1091432*1091432110961418183Aggregatibacter actinomycetemcomitans D11S-1, complete genome5e-20107BLASTN svgBLASTP svg
NC_014837:31265433126543315305826516Pantoea sp. At-9b chromosome, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_020075:63742063742065737119952Candidatus Blochmannia chromaiodes str. 640, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_004337:25482882548288256963421347Shigella flexneri 2a str. 301, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_004741:25264212526421254776721347Shigella flexneri 2a str. 2457T, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_008258:25428632542863256544822586Shigella flexneri 5 str. 8401, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_009053:553298*55329858152528228Actinobacillus pleuropneumoniae L20, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007292:623765*62376565772633962Candidatus Blochmannia pennsylvanicus str. BPEN, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_014500:3097362*3097362318793090569Dickeya dadantii 3937 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_005126:34853303485330350809922770Photorhabdus luminescens subsp. laumondii TTO1, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_012962:26395002639500266574326244Photorhabdus asymbiotica, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_012962:30600633060063308387423812Photorhabdus asymbiotica, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_012962:34999003499900355871558816Photorhabdus asymbiotica, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_012962:44270004427000445406927070Photorhabdus asymbiotica, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_012962:82090982090984059919691Photorhabdus asymbiotica, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_007941:11319113195659945281Escherichia coli UTI89 plasmid pUTI89, complete sequence4e-0867.9BLASTN svgBLASTP svg
NC_005126:5188976*5188976521454825573Photorhabdus luminescens subsp. laumondii TTO1, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_005126:43337674333767439509961333Photorhabdus luminescens subsp. laumondii TTO1, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_005126:14250014250016059218093Photorhabdus luminescens subsp. laumondii TTO1, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_007005:14159621415962143723321272Pseudomonas syringae pv. syringae B728a, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_012962:10415181041518106637824861Photorhabdus asymbiotica, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_005362:52848528487339820551Lactobacillus johnsonii NCC 533, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_018697:61883261883264338524554Cycloclasticus sp. P1 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015275:3594890*3594890363588740998Clostridium lentocellum DSM 5427 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_005126:48575004857500488024422745Photorhabdus luminescens subsp. laumondii TTO1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_005126:36304593630459368847858020Photorhabdus luminescens subsp. laumondii TTO1, complete genome3e-0661.9BLASTN svgBLASTP svg