Pre_GI: BLASTN Hits

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Query: NC_005126:3121722 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 3121722, End: 3180690, Length: 58969

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_021150:2546000*2546000257243726438Azotobacter vinelandii CA6, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_012560:2546000*2546000257242526426Azotobacter vinelandii DJ, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_004463:22624672262467231174249276Bradyrhizobium japonicum USDA 110, complete genome2e-1283.8BLASTN svgBLASTP svg
NC_014718:440960*44096046077219813Burkholderia rhizoxinica HKI 454 chromosome, complete genome5e-1075.8BLASTN svgBLASTP svg
NC_014718:630188*63018865954429357Burkholderia rhizoxinica HKI 454 chromosome, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_014718:102852*10285212309920248Burkholderia rhizoxinica HKI 454 chromosome, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_014722:1971305*1971305199935928055Burkholderia rhizoxinica HKI 454, complete genome7e-0661.9BLASTN svgBLASTP svg
NC_014722:1467996*1467996149010322108Burkholderia rhizoxinica HKI 454, complete genome2e-1593.7BLASTN svgBLASTP svg
NC_014500:2589089*2589089260812419036Dickeya dadantii 3937 chromosome, complete genome1e-170609BLASTN svgBLASTP svg
NC_012880:2425330*2425330245003424705Dickeya dadantii Ech703, complete genome0674BLASTN svgBLASTP svg
NC_012880:2399205*2399205242050221298Dickeya dadantii Ech703, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_012912:2216749*2216749224082124073Dickeya zeae Ech1591, complete genome3e-156561BLASTN svgBLASTP svg
NC_020063:2011019*2011019203659925581Enterobacteriaceae bacterium strain FGI 57, complete genome2e-114422BLASTN svgBLASTP svg
NC_013961:2579000*2579000261224833249Erwinia amylovora, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_004547:1683593*1683593172730343711Erwinia carotovora subsp. atroseptica SCRI1043, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_012214:1267589*1267589129886031272Erwinia pyrifoliae Ep1/96, complete genome5e-1075.8BLASTN svgBLASTP svg
NC_013850:2103469*2103469214696843500Klebsiella variicola At-22 chromosome, complete genome7e-77297BLASTN svgBLASTP svg
NC_007947:2140000*2140000218514745148Methylobacillus flagellatus KT, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_012968:1731976*1731976175455122576Methylotenera mobilis JLW8, complete genome3e-1179.8BLASTN svgBLASTP svg
NC_012962:35680463568046362047652431Photorhabdus asymbiotica, complete genome9e-98367BLASTN svgBLASTP svg
NC_012962:34999003499900355871558816Photorhabdus asymbiotica, complete genome1e-158569BLASTN svgBLASTP svg
NC_012962:16616831661683171390552223Photorhabdus asymbiotica, complete genome8e-123450BLASTN svgBLASTP svg
NC_012962:39337153933715398542551711Photorhabdus asymbiotica, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_005126:36304593630459368847858020Photorhabdus luminescens subsp. laumondii TTO1, complete genome2e-160575BLASTN svgBLASTP svg
NC_005126:38120543812054388079068737Photorhabdus luminescens subsp. laumondii TTO1, complete genome1e-93353BLASTN svgBLASTP svg
NC_005126:12650711265071131880053730Photorhabdus luminescens subsp. laumondii TTO1, complete genome2e-64256BLASTN svgBLASTP svg
NC_002516:3079850*3079850310675226903Pseudomonas aeruginosa PAO1, complete genome7e-0661.9BLASTN svgBLASTP svg
NC_008463:2467219*2467219250339236174Pseudomonas aeruginosa UCBPP-PA14, complete genome7e-0661.9BLASTN svgBLASTP svg
NC_007005:44113884411388444643035043Pseudomonas syringae pv. syringae B728a, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_011083:1408202*1408202142698618785Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,2e-104389BLASTN svgBLASTP svg
NC_006511:1579776*1579776160172721952Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC1e-96363BLASTN svgBLASTP svg
NC_010102:17031721703172172512221951Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,2e-104389BLASTN svgBLASTP svg
NC_003198:1693623*1693623171542721805Salmonella enterica subsp. enterica serovar Typhi str. CT18,6e-102381BLASTN svgBLASTP svg
NC_004631:1271500*1271500129345821959Salmonella enterica subsp. enterica serovar Typhi Ty2, complete6e-102381BLASTN svgBLASTP svg
NC_003197:1401603*1401603142524123639Salmonella typhimurium LT2, complete genome2e-104389BLASTN svgBLASTP svg
NC_010658:1772994*1772994179509922106Shigella boydii CDC 3083-94, complete genome6e-99371BLASTN svgBLASTP svg
NC_013959:1723037*1723037174709924063Sideroxydans lithotrophicus ES-1 chromosome, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_018868:569423*56942361904449622Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_015951:46000460007890132902Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, complete1e-1077.8BLASTN svgBLASTP svg
NC_015172:775128*77512881508539958Syntrophobotulus glycolicus DSM 8271 chromosome, complete genome4e-0765.9BLASTN svgBLASTP svg
NC_002506:298868*29886831909920232Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete4e-29139BLASTN svgBLASTP svg
NC_013722:1816561*1816561186559949039Xanthomonas albilineans, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_013722:1785692*1785692183919253501Xanthomonas albilineans, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_013722:850307*85030787951329207Xanthomonas albilineans, complete genome7e-0971.9BLASTN svgBLASTP svg
NC_014228:1712339*1712339175523642898Xenorhabdus nematophila ATCC 19061, complete genome01752BLASTN svgBLASTP svg
NC_014228:1929665*1929665198074651082Xenorhabdus nematophila ATCC 19061, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_003143:27414782741478276426222785Yersinia pestis CO92, complete genome1e-1077.8BLASTN svgBLASTP svg