Pre_GI: BLASTP Hits

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Query: NC_005126:4423964:4439167 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 4439167, End: 4439955, Length: 789

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012962:1189021:119456611945661195354789Photorhabdus asymbiotica, complete genometype iii secretion component protein sctt9e-103373
NC_007645:3343815:335798933579893358774786Hahella chejuensis KCTC 2396, complete genomeType III secretory pathway, component EscT4e-43174
NC_008011:663958:669154669154669969816Lawsonia intracellularis PHE/MN1-00, complete genomeType III secretion component protein SctT9e-23107
NC_016901:2661971:266197126619712662771801Shewanella baltica OS678 chromosome, complete genometype III secretion protein SpaR/YscT/HrcT1e-1790.5
NC_009997:2699644:270205427020542702854801Shewanella baltica OS195, complete genometype III secretion protein SpaR/YscT/HrcT1e-1790.5
NC_011149:1710601:171555017155501716329780Salmonella enterica subsp. enterica serovar Agona str. SL483,type III secretion apparatus protein SpaR/YscT/HrcT5e-1788.2
NC_011094:1435347:146355914635591464338780Salmonella enterica subsp. enterica serovar Schwarzengrund strtype III secretion apparatus protein SpaR/YscT/HrcT8e-1787.4
NC_011205:1852665:185761418576141858393780Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853type III secretion apparatus protein SpaR/YscT/HrcT1e-1687.4
NC_014366:2513352:251499225149922515783792Gamma proteobacterium HdN1, complete genomeType III secretory pathway protein1e-1687
NC_003198:1621347:162629616262961627075780Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative type III secretion protein1e-1687
NC_016831:1236786:126502812650281265807780Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative type III secretion protein2e-1686.7
NC_012125:2360815:236576423657642366543780Salmonella enterica subsp. enterica serovar Paratyphi C straintype III secretion protein2e-1686.3
NC_010102:1616530:162147916214791622126648Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-1685.9
NC_010067:1507823:151635415163541517133780Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-1685.9
NC_011080:1470794:149909514990951499874780Salmonella enterica subsp. enterica serovar Newport str. SL254,type III secretion apparatus protein SpaR/YscT/HrcT2e-1685.9
NC_006511:1506915:151186415118641512643780Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative type III secretion protein2e-1685.9
NC_011147:1502096:150704515070451507824780Salmonella enterica subsp. enterica serovar Paratyphi A strtype III secretion protein2e-1685.9
NC_003197:1471349:149965514996551500434780Salmonella typhimurium LT2, complete genometype III secretion system apparatus protein2e-1685.9
NC_016856:1481325:150963115096311510410780Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Stype III secretion system apparatus protein2e-1685.9
NC_016860:1469066:149734214973421498121780Salmonella enterica subsp. enterica serovar Typhimurium strputative type III secretion protein2e-1685.9
NC_016863:1429516:145782214578221458601780Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1type III secretion system apparatus protein2e-1685.9
NC_011294:1723852:172880117288011729580780Salmonella enterica subsp. enterica serovar Enteritidis strtype III secretion protein4e-1685.1
NC_011274:1763676:176862517686251769404780Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91type III secretion protein5e-1685.1
NC_007435:566436:587396587396588214819Burkholderia pseudomallei 1710b chromosome II, complete sequencetype III secretion protein SpaR/YscT/HrcT5e-1581.6
NC_009075:1906915:192599819259981926816819Burkholderia pseudomallei 668 chromosome II, complete sequencetype III secretion protein SpaR/YscT/HrcT5e-1581.6
NC_006351:1886475:190716619071661907984819Burkholderia pseudomallei K96243 chromosome 2, complete sequencetype III secretion-associated protein5e-1581.6
NC_016902:903241:913892913892914659768Escherichia coli KO11FL chromosome, complete genometype III secretion protein SpaR/YscT/HrcT7e-1581.3
NC_011415:3217796:324009432400943240861768Escherichia coli SE11 chromosome, complete genomeputative type III secretion protein7e-1581.3
CP002185:3167738:319141731914173192184768Escherichia coli W, complete genometype III secretion system protein7e-1581.3
CP002516:903241:913892913892914659768Escherichia coli KO11, complete genometype III secretion protein SpaR/YscT/HrcT7e-1581.3
NC_011748:3196173:321850832185083219275768Escherichia coli 55989, complete genomeputative Type III secretion protein EpaR9e-1580.9
CU928145:3196173:321850832185083219275768Escherichia coli 55989 chromosome, complete genomeputative Type III secretion protein EpaR9e-1580.9
NC_009800:2995958:302064530206453021412768Escherichia coli HS, complete genometype III secretion apparatus protein EpaR8e-1580.9
NC_010468:906957:917613917613918380768Escherichia coli ATCC 8739, complete genometype III secretion protein SpaR/YscT/HrcT8e-1580.9
NC_013364:3552284:357458735745873575354768Escherichia coli O111:H- str. 11128, complete genometype III secretion protein EpaR1e-1480.5
NC_013361:3867558:388985638898563890623768Escherichia coli O26:H11 str. 11368 chromosome, complete genometype III secretion protein EpaR1e-1480.5
NC_011751:3285646:330819233081923308959768Escherichia coli UMN026 chromosome, complete genomeputative type III secretion protein EpaR1e-1480.5
NC_002655:4653160:468527046852704686046777Escherichia coli O157:H7 EDL933, complete genomeescT1e-1377.4
NC_013361:5319497:533690553369055337681777Escherichia coli O26:H11 str. 11368 chromosome, complete genomeT3SS structure protein EscT1e-1377.4
NC_013353:3669500:370620037062003706976777Escherichia coli O103:H2 str. 12009, complete genomeT3SS structure protein EscT1e-1377.4
AP010958:3669500:370620037062003706976777Escherichia coli O103:H2 str. 12009 DNA, complete genomeT3SS structure protein EscT1e-1377.4
NC_002695:4584177:461628746162874617063777Escherichia coli O157:H7 str. Sakai, complete genomeEscT1e-1377.4
NC_011353:4688000:471939147193914720167777Escherichia coli O157:H7 str. EC4115 chromosome, complete genometype III secretion apparatus protein SpaR/YscT/HrcT1e-1377.4
NC_013008:4643825:467543246754324676208777Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeLEE-encoded type III secretion system factor1e-1377.4
NC_013364:3701895:374769437476943748470777Escherichia coli O111:H- str. 11128, complete genomeputative T3SS structure protein EscT1e-1377.4
NC_013941:4470932:450379145037914504567777Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeescT1e-1377.4
NC_011601:4096427:413005341300534130829777Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeT3SS structure protein EscT9e-1477.4
CU928160:3030324:305262330526233053390768Escherichia coli IAI1 chromosome, complete genomeputative Type III secretion protein EpaR1e-1376.6
AP010958:3474077:349637434963743497141768Escherichia coli O103:H2 str. 12009 DNA, complete genometype III secretion protein EpaR1e-1376.6
NC_011741:3030324:305262330526233053390768Escherichia coli IAI1 chromosome, complete genomeputative Type III secretion protein EpaR1e-1376.6
NC_013353:3474077:349637434963743497141768Escherichia coli O103:H2 str. 12009, complete genometype III secretion protein EpaR1e-1376.6
NC_009801:3175714:319800931980093198776768Escherichia coli E24377A, complete genometype III secretion apparatus protein EpaR5e-1375.1
NC_012660:819381:821326821326822114789Pseudomonas fluorescens SBW25 chromosome, complete genomeputative type III secretion protein2e-1272.8
NC_013971:2876733:289699928969992897763765Erwinia amylovora ATCC 49946 chromosome, complete genometype III secretion system protein5e-1271.6
NC_013961:851044:873537873537874301765Erwinia amylovora, complete genomeSurface presentation of antigens protein spaR5e-1271.6
NC_012214:2221702:224179622417962242566771Erwinia pyrifoliae Ep1/96, complete genomeSurface presentation of antigens protein (Spa29 protein), Type III secretion apparatus7e-1271.2
NC_010694:2971170:299086429908642991628765Erwinia tasmaniensis, complete genomeSurface presentation of antigens protein (Spa29 protein), Type III secretion apparatus8e-1167.4
NC_002678:5139557:516137151613715162189819Mesorhizobium loti MAFF303099, complete genometranslocation protein in type III secretion system, hrcT9e-1167.4
NC_017249:8283701:828370182837018284522822Bradyrhizobium japonicum USDA 6, complete genomeRhcT protein3e-1065.9
NC_013971:1660144:168608816860881686858771Erwinia amylovora ATCC 49946 chromosome, complete genometype III secretion system protein6e-1064.7
NC_013961:1622616:164856016485601649330771Erwinia amylovora, complete genomeSurface presentation of antigens protein SpaR6e-1064.7
NC_006905:2960260:298611829861182986909792Salmonella enterica subsp. enterica serovar Choleraesuis strsurface presentation of antigens; secretory proteins7e-1064.7
NC_011080:2982346:300909430090943009885792Salmonella enterica subsp. enterica serovar Newport str. SL254,type III secretion apparatus protein SpaR/YscT/HrcT1e-0963.9
NC_006511:2819128:284712628471262847917792Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCsecretory protein (associated with virulence)1e-0963.9
NC_011147:2814664:284266228426622843453792Salmonella enterica subsp. enterica serovar Paratyphi A strvirulence secretory protein1e-0963.9
NC_011205:3050235:307698730769873077778792Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853type III secretion apparatus protein SpaR/YscT/HrcT1e-0963.9
NC_011274:2881306:290805429080542908845792Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91virulence associated secretory protein1e-0963.9
NC_011294:2890500:291725029172502918041792Salmonella enterica subsp. enterica serovar Enteritidis strsecretory protein1e-0963.9
NC_016831:2867766:289451428945142895305792Salmonella enterica subsp. enterica serovar Gallinarum/pullorumsecretory protein (associated with virulence)1e-0963.9
NC_003198:2856596:288459028845902885381792Salmonella enterica subsp. enterica serovar Typhi str. CT18,secretory protein (associated with virulence)1e-0963.9
NC_004631:2842453:287044728704472871238792Salmonella enterica subsp. enterica serovar Typhi Ty2, completevirulence-associated secretory protein1e-0963.9
NC_016832:2829767:285774628577462858537792Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Surface presentation of antigens protein spaR1e-0963.9
NC_010102:2967464:299557229955722996363792Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-0963.5
NC_003197:3005842:303259030325903033381792Salmonella typhimurium LT2, complete genomeneedle complex export protein1e-0963.5
NC_011149:2912219:294111629411162941907792Salmonella enterica subsp. enterica serovar Agona str. SL483,type III secretion apparatus protein SpaR/YscT/HrcT1e-0963.5
NC_011094:2913500:293978629397862940577792Salmonella enterica subsp. enterica serovar Schwarzengrund strtype III secretion apparatus protein SpaR/YscT/HrcT1e-0963.5
NC_012125:2938519:296650129665012967292792Salmonella enterica subsp. enterica serovar Paratyphi C strainvirulence associated secretory protein1e-0963.5
NC_016810:3028421:305516630551663055957792Salmonella enterica subsp. enterica serovar Typhimurium strtype III secretion system secretory apparatus1e-0963.5
NC_016856:3026426:305282730528273053618792Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sneedle complex export protein1e-0963.5
NC_016857:3028421:305516630551663055957792Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74needle complex export protein1e-0963.5
NC_016860:3029272:305602030560203056811792Salmonella enterica subsp. enterica serovar Typhimurium strtype III secretion system apparatus protein SpaR/YscT/HrcT1e-0963.5
NC_016863:2974333:300108030010803001871792Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1needle complex export protein1e-0963.5
NC_017046:3027161:305390630539063054697792Salmonella enterica subsp. enterica serovar Typhimurium str. 798type III secretion system secretory apparatus1e-0963.5
NC_015761:2726000:275218927521892752980792Salmonella bongori NCTC 12419, complete genomevirulence associated secretory protein6e-0961.2
NC_015391:2059191:207640620764062077098693Carnobacterium sp. 17-4 chromosome, complete genomeflagellar biosynthesis protein FliR7e-0857.8
NC_013722:1689125:172499717249971725767771Xanthomonas albilineans, complete genomeprobable xanthomonas secretion apparatus protein9e-0857.4
NC_014652:628435:650982650982651764783Caldicellulosiruptor hydrothermalis 108 chromosome, completeflagellar biosynthetic protein flir7e-0754.7
NC_007508:479799:482317482317483147831Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeHrcT protein1e-0653.5
NC_017271:1517820:151829615182961519126831Xanthomonas campestris pv. raphani 756C chromosome, completetype III secretion protein HrcT2e-0653.1
NC_003902:1442705:144321114432111444041831Xanthomonas campestris pv. campestris str. ATCC 33913, completeHrpB8 protein2e-0653.1
NC_007086:3582500:359973635997363600566831Xanthomonas campestris pv. campestris str. 8004, complete genomeHrpB8 protein2e-0653.1
NC_010688:3487000:350447635044763505306831Xanthomonas campestris pv. campestris, complete genomeHrcT protein2e-0653.1
NC_014377:1089894:108913310891331089897765Thermosediminibacter oceani DSM 16646 chromosome, complete genomeflagellar biosynthetic protein FliR2e-0652.8
NC_009664:533021:536377536377537201825Kineococcus radiotolerans SRS30216, complete genomeflagellar biosynthetic protein FliR4e-0652