Pre_GI: BLASTP Hits

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Query: NC_005126:4423964:4438904 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 4438904, End: 4439170, Length: 267

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012962:1189021:119535111953511195617267Photorhabdus asymbiotica, complete genometype iii secretion component protein scts5e-40162
NC_007645:3343815:335881133588113359080270Hahella chejuensis KCTC 2396, complete genomeType III secretory pathway, component EscS3e-22103
NC_008011:663958:668846668846669106261Lawsonia intracellularis PHE/MN1-00, complete genomeprobable translocation protein in type III secretion2e-1787.8
NC_013361:5319497:533663653366365336905270Escherichia coli O26:H11 str. 11368 chromosome, complete genomeT3SS structure protein EscS4e-1477
NC_013353:3669500:370697637069763707245270Escherichia coli O103:H2 str. 12009, complete genomeT3SS structure protein EscS4e-1477
AP010958:3669500:370697637069763707245270Escherichia coli O103:H2 str. 12009 DNA, complete genomeT3SS structure protein EscS4e-1477
NC_002695:4584177:461706346170634617332270Escherichia coli O157:H7 str. Sakai, complete genomeEscS1e-1375.5
NC_002655:4653160:468604646860464686315270Escherichia coli O157:H7 EDL933, complete genomeescS1e-1375.5
NC_011601:4096427:413082941308294131098270Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeT3SS structure protein EscS1e-1375.5
NC_013008:4643825:467620846762084676477270Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeLEE-encoded type III secretion system factor1e-1375.5
NC_013364:3701895:374847037484703748739270Escherichia coli O111:H- str. 11128, complete genomeT3SS structure protein EscS1e-1375.5
NC_012660:819381:821052821052821315264Pseudomonas fluorescens SBW25 chromosome, complete genomeputative type III secretion membrane protein1e-1375.5
NC_013941:4470932:450456745045674504839273Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeEscS1e-1375.1
NC_009997:2699644:270178227017822702051270Shewanella baltica OS195, complete genometype III secretion protein, HrpO family6e-1372.8
NC_014366:2513352:251578025157802516049270Gamma proteobacterium HdN1, complete genomeType III secretory pathway protein3e-1270.5
CU928160:3030324:305339230533923053652261Escherichia coli IAI1 chromosome, complete genomefragment of surface presentation of antigens protein (partial)1e-1168.9
NC_002655:3769643:379203937920393792299261Escherichia coli O157:H7 EDL933, complete genometype III secretion apparatus protein1e-1168.9
NC_010468:906957:917351917351917611261Escherichia coli ATCC 8739, complete genometype III secretion protein, HrpO family1e-1168.9
NC_009800:2995958:302141430214143021674261Escherichia coli HS, complete genometype III secretion apparatus protein EpaQ1e-1168.9
NC_002695:3702344:372473437247343724994261Escherichia coli O157:H7 str. Sakai, complete genomeEpaQ1e-1168.9
NC_009801:3175714:319877831987783199038261Escherichia coli E24377A, complete genometype III secretion apparatus protein EpaQ1e-1168.9
NC_011353:3805819:382913138291313829391261Escherichia coli O157:H7 str. EC4115 chromosome, complete genometype III secretion apparatus protein EpaQ1e-1168.9
NC_011741:3030324:305339230533923053652261Escherichia coli IAI1 chromosome, complete genome1e-1168.9
NC_013008:3761467:378385737838573784117261Escherichia coli O157:H7 str. TW14359 chromosome, complete genometype III secretion apparatus protein1e-1168.9
NC_013361:3867558:389062538906253890885261Escherichia coli O26:H11 str. 11368 chromosome, complete genometype III secretion protein EpaQ1e-1168.9
NC_013364:3552284:357535635753563575616261Escherichia coli O111:H- str. 11128, complete genometype III secretion protein EpaQ1e-1168.9
NC_011748:3196173:321927732192773219537261Escherichia coli 55989, complete genome1e-1168.9
CU928145:3196173:321927732192773219537261Escherichia coli 55989 chromosome, complete genomefragment of surface presentation of antigens protein (partial)1e-1168.9
NC_011274:1763676:176940517694051769671267Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91type III secretion protein1e-1168.6
AP010958:3474077:349714334971433497403261Escherichia coli O103:H2 str. 12009 DNA, complete genometype III secretion protein EpaQ1e-1168.6
NC_013353:3474077:349714334971433497403261Escherichia coli O103:H2 str. 12009, complete genometype III secretion protein EpaQ1e-1168.6
NC_020418:14965:282832828328549267Morganella morganii subsp. morganii KT, complete genomeType III secretion inner membrane protein1e-1168.6
NC_011751:3285646:330896133089613309308348Escherichia coli UMN026 chromosome, complete genomesurface presentation of antigens protein1e-1168.6
NC_003197:1471349:149938814993881499654267Salmonella typhimurium LT2, complete genometype III secretion system apparatus protein2e-1167.8
NC_010102:1616530:162225916222591622525267Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-1167.8
NC_006511:1506915:151264415126441512910267Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative type III secretion protein2e-1167.8
NC_011094:1435347:146329214632921463558267Salmonella enterica subsp. enterica serovar Schwarzengrund strsecretion system apparatus protein SsaS2e-1167.8
NC_011147:1502096:150782515078251508091267Salmonella enterica subsp. enterica serovar Paratyphi A strtype III secretion protein2e-1167.8
NC_011294:1723852:172958117295811729847267Salmonella enterica subsp. enterica serovar Enteritidis strtype III secretion protein2e-1167.8
NC_012125:2360815:236654423665442366810267Salmonella enterica subsp. enterica serovar Paratyphi C straintype III secretion protein2e-1167.8
NC_016856:1481325:150936415093641509630267Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Stype III secretion system apparatus protein2e-1167.8
NC_016860:1469066:149707514970751497341267Salmonella enterica subsp. enterica serovar Typhimurium strputative type III secretion protein2e-1167.8
NC_016863:1429516:145755514575551457821267Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1type III secretion system apparatus protein2e-1167.8
NC_015376:345347:361791361791362054264Burkholderia gladioli BSR3 chromosome chromosome 2, completeType III secretion inner membrane protein SctS2e-1167.4
NC_003198:1621347:162707616270761627342267Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative type III secretion protein2e-1167.4
NC_009253:2615777:261761926176192617888270Desulfotomaculum reducens MI-1 chromosome, complete genomeflagellar biosynthetic protein FliQ3e-1167
NC_010067:1507823:151713415171341517400267Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein8e-1165.9
NC_021184:2238500:225807322580732258342270Desulfotomaculum gibsoniae DSM 7213, complete genomeflagellar biosynthetic protein FliQ5e-1063.2
NC_015761:2726000:275298427529842753244261Salmonella bongori NCTC 12419, complete genomevirulence associated secretory protein1e-0962
NC_003197:3005842:303338530333853033645261Salmonella typhimurium LT2, complete genomeneedle complex export protein1e-0961.6
NC_003198:2856596:288538528853852885645261Salmonella enterica subsp. enterica serovar Typhi str. CT18,secretory protein (associated with virulence)1e-0961.6
NC_006511:2819128:284792128479212848181261Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCsecretory protein (associated with virulence)1e-0961.6
NC_010102:2967464:299636729963672996627261Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-0961.6
NC_011149:2912219:294191129419112942171261Salmonella enterica subsp. enterica serovar Agona str. SL483,EpaQ1e-0961.6
NC_011080:2982346:300988930098893010149261Salmonella enterica subsp. enterica serovar Newport str. SL254,EpaQ1e-0961.6
NC_011094:2913500:294058129405812940841261Salmonella enterica subsp. enterica serovar Schwarzengrund strprotein EpaQ1e-0961.6
NC_011147:2814664:284345728434572843717261Salmonella enterica subsp. enterica serovar Paratyphi A strvirulence secretory protein1e-0961.6
NC_011294:2890500:291804529180452918305261Salmonella enterica subsp. enterica serovar Enteritidis strsecretory protein1e-0961.6
NC_012125:2938519:296729629672962967556261Salmonella enterica subsp. enterica serovar Paratyphi C strainvirulence associated secretory protein1e-0961.6
NC_017046:3027161:305470130547013054961261Salmonella enterica subsp. enterica serovar Typhimurium str. 798type III secretion system secretory apparatus1e-0961.6
NC_016863:2974333:300187530018753002135261Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1needle complex export protein1e-0961.6
NC_016860:3029272:305681530568153057075261Salmonella enterica subsp. enterica serovar Typhimurium strprotein EpaQ1e-0961.6
NC_016857:3028421:305596130559613056221261Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74Surface presentation of antigens protein SpaQ1e-0961.6
NC_016856:3026426:305362230536223053882261Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sneedle complex export protein1e-0961.6
NC_016831:2867766:289530928953092895569261Salmonella enterica subsp. enterica serovar Gallinarum/pullorumsecretory protein (associated with virulence)1e-0961.6
NC_016810:3028421:305596130559613056221261Salmonella enterica subsp. enterica serovar Typhimurium strtype III secretion system secretory apparatus1e-0961.6
NC_007519:3527207:354193335419333542202270Desulfovibrio alaskensis G20 chromosome, complete genomeflagellar biosynthetic protein FliQ2e-0961.2
NC_012225:377441:380770380770381039270Brachyspira hyodysenteriae WA1, complete genomeflagellar biosynthetic protein (fliQ)9e-0958.9
NC_014150:233194:250344250344250613270Brachyspira murdochii DSM 12563 chromosome, complete genomeflagellar biosynthetic protein FliQ9e-0958.9
NC_009664:533021:537206537206537484279Kineococcus radiotolerans SRS30216, complete genomeexport protein FliQ family 31e-0858.5
NC_018607:1134900:113570811357081135977270Brachyspira pilosicoli B2904 chromosome, complete genomeflagellar biosynthetic protein FliQ7e-0855.8
NC_013961:1622616:164829316482931648547255Erwinia amylovora, complete genomeSurface presentation of antigens protein spaQ2e-0754.7
NC_013971:1660144:168582116858211686075255Erwinia amylovora ATCC 49946 chromosome, complete genometype III secretion system protein2e-0754.7
NC_012214:2221702:224257922425792242833255Erwinia pyrifoliae Ep1/96, complete genomeType III secretion apparatus2e-0754.3
NC_010694:2971170:299164129916412991895255Erwinia tasmaniensis, complete genomeType III secretion apparatus3e-0753.9
CP002516:903241:913631913631913890260Escherichia coli KO11, complete genome3e-0753.9
NC_015391:2059191:207716920771692077432264Carnobacterium sp. 17-4 chromosome, complete genomeflagellar biosynthesis protein FliQ3e-0753.9
NC_011415:3217796:324093732409373241122186Escherichia coli SE11 chromosome, complete genomeputative type III secretion protein4e-0753.5
CP002185:3167738:319226031922603192445186Escherichia coli W, complete genome4e-0753.5
NC_010520:2860960:286282328628232863092270Clostridium botulinum A3 str. Loch Maree, complete genomeflagellar biosynthesis protein FliQ6e-0753.1
NC_018664:1663324:166913216691321669398267Clostridium acidurici 9a chromosome, complete genomeflagellar biosynthetic protein FliQ5e-0753.1
NC_008277:272741:286802286802287065264Borrelia afzelii PKo, complete genomeflagellar biosynthesis protein5e-0753.1
NC_017238:272980:287041287041287304264Borrelia afzelii PKo chromosome, complete genomeflagellar biosynthetic protein FliQ5e-0753.1
NC_009698:2649453:265131626513162651585270Clostridium botulinum A str. Hall chromosome, complete genomeflagellar biosynthesis protein FliQ5e-0753.1
NC_013971:2876733:289777628977762898030255Erwinia amylovora ATCC 49946 chromosome, complete genometype III secretion system protein9e-0752.4
NC_013961:851044:873270873270873524255Erwinia amylovora, complete genomeSurface presentation of antigens protein spaQ9e-0752.4
NC_007759:1356439:135817813581781358447270Syntrophus aciditrophicus SB, complete genomeflagellar biosynthetic protein9e-0752.4
NC_020126:8080574:808962680896268089895270Myxococcus stipitatus DSM 14675, complete genomeputative type III secretion system protein1e-0652
NC_014328:1135854:114378211437821144051270Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeflagellar biosynthesis protein FliQ1e-0652
NC_008576:4701930:104531045310722270Magnetococcus sp. MC-1, complete genomeflagellar biosynthetic protein FliQ1e-0651.6
NC_008593:1103293:112253111225311122800270Clostridium novyi NT, complete genomeflagellar biosynthetic protein FliQ1e-0651.6
NC_006156:271410:286692286692286955264Borrelia garinii PBi chromosome linear, complete sequenceflagellar biosynthesis protein3e-0650.4
NC_021182:2883716:289824828982482898517270Clostridium pasteurianum BC1, complete genomeflagellar biosynthetic protein FliQ3e-0650.4
NC_011126:555483:588780588780589049270Hydrogenobaculum sp. Y04AAS1, complete genomeflagellar biosynthetic protein FliQ6e-0649.7