Pre_GI: BLASTP Hits

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Query: NC_005126:4423964:4427462 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 4427462, End: 4427965, Length: 504

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002695:4584177:461292846129284613383456Escherichia coli O157:H7 str. Sakai, complete genomeCesD7e-1063.2
NC_002655:4653160:468191146819114682366456Escherichia coli O157:H7 EDL933, complete genomecesD7e-1063.2
NC_013008:3761467:377303237730323773523492Escherichia coli O157:H7 str. TW14359 chromosome, complete genomechaperone2e-0652
NC_013353:3474077:348632434863243486815492Escherichia coli O103:H2 str. 12009, complete genomechaperone2e-0652
NC_013364:3701895:374433437443343744789456Escherichia coli O111:H- str. 11128, complete genomechaperone CesD7e-1063.2
AP010958:3669500:370283237028323703287456Escherichia coli O103:H2 str. 12009 DNA, complete genomechaperone CesD5e-1167
NC_013353:3669500:370283237028323703287456Escherichia coli O103:H2 str. 12009, complete genomechaperone CesD5e-1167
NC_011601:4096427:412669341266934127148456Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomechaperone CesD7e-1063.2
NC_010660:86445:108269108269108736468Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequencechaperone protein IpgC8e-1062.8
NC_016857:3028421:305347430534743053971498Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74chaperone protein SicA2e-0754.7
NC_013941:3540420:355198435519843552475492Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein2e-0652
NC_002655:3769643:378120837812083781699492Escherichia coli O157:H7 EDL933, complete genomehypothetical protein2e-0652
NC_016832:2829767:285605428560542856551498Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein2e-0754.7
NC_012125:2938519:296480929648092965306498Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein2e-0754.7
NC_011147:2814664:284097028409702841467498Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein2e-0754.7
NC_010102:2967464:299388029938802994377498Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-0754.7
NC_010067:1507823:153181215318121532285474Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein8e-0753.1
NC_002695:3702344:371390937139093714400492Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-0652
NC_015761:2726000:275049727504972750994498Salmonella bongori NCTC 12419, complete genomehypothetical protein2e-0754.7
NC_011353:3805819:381830638183063818797492Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein2e-0652
NC_011274:2881306:290636229063622906859498Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein2e-0754.7
NC_010102:1616530:163691916369191637353435Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-0755.1
NC_016831:2867766:289282228928222893319498Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein2e-0754.7
NC_011294:2890500:291555829155582916055498Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein2e-0754.7
NC_013008:4643825:467207346720734672528456Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeLEE-encoded type III secretion system factor7e-1063.2
AP010958:3474077:348632434863243486815492Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted chaperone2e-0652
NC_013722:1689125:172702117270211727536516Xanthomonas albilineans, complete genomeprobable xsa-invasion chaperone protein7e-0959.7
NC_011751:3285646:329813432981343298625492Escherichia coli UMN026 chromosome, complete genomeputative chaperone3e-0651.2
NC_011750:3407500:342004534200453420536492Escherichia coli IAI39 chromosome, complete genomeputative chaperone4e-0650.8
NC_011751:4293966:430138243013824301879498Escherichia coli UMN026 chromosome, complete genomeputative type III secretion chaperone2e-0651.6
NC_011750:4390000:441960144196014420098498Escherichia coli IAI39 chromosome, complete genomeputative type III secretion chaperone8e-0753.1
NC_020418:14965:258792587926364486Morganella morganii subsp. morganii KT, complete genomeputative type III secretion chaperone8e-1062.8
NC_004631:1325817:133892713389271339400474Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative type III secretion system chaperone protein2e-0755.5
NC_003198:1621347:164173616417361642209474Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative Type III secretion system chaperone protein2e-0755.5
NC_006511:1506915:152730415273041527777474Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative Type III secretion system chaperone protein2e-0755.5
NC_016831:1236786:124993312499331250367435Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative Type III secretion system chaperone protein2e-0755.1
NC_008011:1394777:141913214191321419671540Lawsonia intracellularis PHE/MN1-00, complete genomeregulatory protein PcrH1e-1169.3
NC_016863:2974333:299938829993882999885498Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1secretion chaperone2e-0754.7
NC_016856:3026426:305113530511353051632498Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Ssecretion chaperone2e-0754.7
NC_003197:3005842:303089830308983031395498Salmonella typhimurium LT2, complete genomesecretion chaperone2e-0754.7
NC_003197:1471349:148452114845211484994474Salmonella typhimurium LT2, complete genomesecretion system chaparone1e-0755.5
NC_006905:1509093:152220915222091522682474Salmonella enterica subsp. enterica serovar Choleraesuis strSecretion system chaparone SscA2e-0755.5
NC_016856:1481325:149449714944971494970474Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Ssecretion system chaperone1e-0755.5
NC_016860:1469066:148220814822081482681474Salmonella enterica subsp. enterica serovar Typhimurium strsecretion system chaperone1e-0755.5
NC_016863:1429516:144268814426881443161474Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1secretion system chaperone1e-0755.5
NC_006905:2960260:298442629844262984923498Salmonella enterica subsp. enterica serovar Choleraesuis strsurface presentation of antigens; secretory proteins2e-0754.7
NC_013361:5319497:534059353405935341048456Escherichia coli O26:H11 str. 11368 chromosome, complete genomeT3SS chaperone CesD5e-1167
NC_010694:2971170:298907229890722989599528Erwinia tasmaniensis, complete genomeType III secretion chaperone2e-1065.1
NC_010694:2138000:215257221525722153087516Erwinia tasmaniensis, complete genomeType III secretion chaperone3e-1168.2
NC_012214:2221702:223997922399792240536558Erwinia pyrifoliae Ep1/96, complete genomeType III secretion chaperone2e-0858.5
NC_013961:1622616:165058016505801651137558Erwinia amylovora, complete genomeType III secretion chaperone SpaT2e-0858.2
NC_013961:851044:875564875564876109546Erwinia amylovora, complete genomeType III secretion chaperone SpaT5e-1063.9
NC_011205:1852665:187305418730541873569516Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853type III secretion low calcium response chaperone LcrH/SycD6e-0856.6
NC_016832:1324820:133790013379001338373474Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Type III secretion low calcium response chaperone LcrH/SycD2e-0755.5
NC_013941:4470932:450043245004324500887456Escherichia coli O55:H7 str. CB9615 chromosome, complete genometype III secretion low calcium response chaperone LcrH/SycD7e-1063.2
NC_011080:1470794:148391914839191484434516Salmonella enterica subsp. enterica serovar Newport str. SL254,type III secretion low calcium response chaperone LcrH/SycD7e-0856.6
NC_016857:1428201:144133114413311441846516Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74type III secretion low calcium response chaperone LcrH/SycD1e-0755.8
NC_011205:3050235:307529530752953075792498Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853type III secretion low calcium response chaperone LcrH/SycD2e-0754.7
NC_011149:2912219:293942429394242939921498Salmonella enterica subsp. enterica serovar Agona str. SL483,type III secretion low calcium response chaperone LcrH/SycD2e-0754.7
NC_011080:2982346:300740230074023007899498Salmonella enterica subsp. enterica serovar Newport str. SL254,type III secretion low calcium response chaperone LcrH/SycD2e-0754.7
NC_011094:1435347:144838414483841448899516Salmonella enterica subsp. enterica serovar Schwarzengrund strtype III secretion low calcium response chaperone LcrH/SycD7e-0856.6
NC_011149:1710601:173099017309901731463474Salmonella enterica subsp. enterica serovar Agona str. SL483,type III secretion low calcium response chaperone LcrH/SycD9e-0856.2
NC_011083:1476894:148999414899941490509516Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,type III secretion low calcium response chaperone LcrH/SycD6e-0856.6
NC_016860:3029272:305432830543283054825498Salmonella enterica subsp. enterica serovar Typhimurium strtype III secretion low calcium response chaperone LcrH/SycD2e-0754.7
NC_011094:2913500:293809429380942938591498Salmonella enterica subsp. enterica serovar Schwarzengrund strtype III secretion low calcium response chaperone LcrH/SycD2e-0754.7
NC_005085:2774370:278236627823662782851486Chromobacterium violaceum ATCC 12472, complete genometype III secretion system CesD protein3e-1167.8
NC_011294:1723852:174424117442411744714474Salmonella enterica subsp. enterica serovar Enteritidis strtype III secretion system chaperone protein9e-0856.2
NC_017046:1428272:144144414414441441917474Salmonella enterica subsp. enterica serovar Typhimurium str. 798type III secretion system chaperone protein1e-0755.5
NC_016810:1428201:144137314413731441846474Salmonella enterica subsp. enterica serovar Typhimurium strType III secretion system chaperone protein1e-0755.5
NC_013971:1660144:168810716881071688664558Erwinia amylovora ATCC 49946 chromosome, complete genometype III secretion system chaperone protein2e-0858.2
NC_012125:2360815:238120423812042381677474Salmonella enterica subsp. enterica serovar Paratyphi C straintype III secretion system chaperone protein2e-0755.5
NC_011274:1763676:178406517840651784538474Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91type III secretion system chaperone protein9e-0856.2
NC_011147:1502096:152248515224851522958474Salmonella enterica subsp. enterica serovar Paratyphi A strtype III secretion system chaperone protein2e-0755.5
NC_014012:2565329:258188125818812582354474Shewanella violacea DSS12, complete genometype III secretion system chaperone, SycD family9e-1062.8
NC_013971:2876733:289519128951912895736546Erwinia amylovora ATCC 49946 chromosome, complete genometype III secretion system protein5e-1063.9
NC_017046:3027161:305221430522143052711498Salmonella enterica subsp. enterica serovar Typhimurium str. 798type III secretion-associated chaperone2e-0754.7
NC_016810:3028421:305347430534743053971498Salmonella enterica subsp. enterica serovar Typhimurium strtype III secretion-associated chaperone2e-0754.7
NC_006511:2819128:284543428454342845931498Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCunknown function2e-0754.7
NC_004631:2842453:286875528687552869252498Salmonella enterica subsp. enterica serovar Typhi Ty2, completeunknown function2e-0754.7
NC_003198:2856596:288289828828982883395498Salmonella enterica subsp. enterica serovar Typhi str. CT18,unknown function2e-0754.7
NC_012962:1189021:120659012065901207099510Photorhabdus asymbiotica, complete genomeyopb/d chaperone sycd6e-72269