Pre_GI: BLASTP Hits

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Query: NC_005126:3812054:3860162 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 3860162, End: 3860554, Length: 393

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012962:3568046:359726535972653597930666Photorhabdus asymbiotica, complete genomemembrane protein2e-50197
NC_009708:915814:936427936427937113687Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein8e-29125
NC_017160:1628500:165192616519261652534609Yersinia pestis D182038 chromosome, complete genomemembrane protein8e-29125
NC_010634:1755548:177946817794681780154687Yersinia pseudotuberculosis PB1/+, complete genomehypothetical protein1e-28125
NC_006155:1756000:177924617792461779932687Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein1e-28125
NC_004088:2966331:298709829870982987784687Yersinia pestis KIM, complete genomehypothetical protein1e-28124
NC_003143:1630000:165984816598481660534687Yersinia pestis CO92, complete genomehypothetical protein1e-28124
NC_004088:3689000:371038437103843711070687Yersinia pestis KIM, complete genomehypothetical protein1e-28124
NC_008150:844727:873712873712874398687Yersinia pestis Antiqua, complete genomehypothetical protein1e-28124
NC_008149:3556999:357826135782613578947687Yersinia pestis Nepal516, complete genomemembrane protein1e-28124
NC_010159:172469:183971183971184657687Yersinia pestis Angola, complete genomehypothetical protein1e-28124
NC_008150:317903:335178335178335864687Yersinia pestis Antiqua, complete genomehypothetical protein1e-28124
NC_005810:3917254:393628139362813936967687Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein1e-28124
NC_003143:1059580:108227710822771082963687Yersinia pestis CO92, complete genomehypothetical protein1e-28124
NC_008149:2802392:282316228231622823848687Yersinia pestis Nepal516, complete genomemembrane protein1e-28124
NC_005810:1467772:148875314887531489439687Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein1e-28124
NC_009381:1682000:170443117044311705117687Yersinia pestis Pestoides F chromosome, complete genomemembrane protein1e-28124
NC_017265:809943:826279826279826965687Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein1e-28124
NC_017265:2586729:260749926074992608185687Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein1e-28124
NC_017168:3977767:399853739985373999223687Yersinia pestis A1122 chromosome, complete genomehypothetical protein1e-28124
NC_017168:3286:223112231122997687Yersinia pestis A1122 chromosome, complete genomehypothetical protein1e-28124
NC_017160:905783:922124922124922810687Yersinia pestis D182038 chromosome, complete genomehypothetical protein1e-28124
NC_017154:902739:920015920015920701687Yersinia pestis D106004 chromosome, complete genomehypothetical protein1e-28124
NC_017154:1644404:167143116714311672117687Yersinia pestis D106004 chromosome, complete genomehypothetical protein1e-28124
NC_014029:961522:977869977869978555687Yersinia pestis Z176003 chromosome, complete genomehypothetical protein1e-28124
NC_014029:1702338:172935817293581730044687Yersinia pestis Z176003 chromosome, complete genomehypothetical protein1e-28124
NC_009381:588137:604467604467605153687Yersinia pestis Pestoides F chromosome, complete genomemembrane protein1e-28124
NC_010634:3720214:374144737414473742133687Yersinia pseudotuberculosis PB1/+, complete genomehypothetical protein3e-28123
NC_006155:3805640:382836638283663829052687Yersinia pseudotuberculosis IP 32953, complete genomePossibly conserved membrane protein3e-28123
NC_010465:893921:910238910238910924687Yersinia pseudotuberculosis YPIII, complete genomehypothetical protein5e-28122
NC_009708:874770:891097891097891783687Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein7e-28122
NC_008563:3119284:312061831206183121283666Escherichia coli APEC O1, complete genomehypothetical protein8e-28122
NC_009708:2788855:284077228407722841458687Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein8e-27119
NC_011283:942594:959882959882960547666Klebsiella pneumoniae 342 chromosome, complete genometype IV/VI secretion system protein, DotU family7e-26115
NC_010501:3575726:359950035995003600168669Pseudomonas putida W619, complete genomehypothetical protein2e-2097.8
NC_016845:3238507:326168232616823262335654Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,membrane protein5e-1993.2
NC_014121:1822895:182289518228951823587693Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative OmpA-family membrane protein5e-1993.2
NC_010067:2529750:255475025547502555439690Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein4e-1993.2
NC_012731:3193880:321288232128823213535654Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein5e-1992.8
NC_011283:2103500:210496821049682105621654Klebsiella pneumoniae 342 chromosome, complete genometype IV/VI secretion system protein, DotU family6e-1992.8
NC_009832:1946401:196238219623821963071690Serratia proteamaculans 568, complete genomehypothetical protein7e-1992.4
NC_009648:1487692:148700614870061487695690Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein2e-1891.3
NC_012731:2302974:230228823022882302977690Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein2e-1891.3
NC_016845:2306744:232966523296652330354690Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein3e-1890.5
NC_013956:4579759:459611545961154596804690Pantoea ananatis LMG 20103 chromosome, complete genomehypothetical protein2e-1787.8
NC_016612:5600177:561867956186795619317639Klebsiella oxytoca KCTC 1686 chromosome, complete genometype VI secretion system protein ImpK1e-1685.1
NC_010552:592154:593929593929594603675Burkholderia ambifaria MC40-6 chromosome 2, complete sequencehypothetical protein4e-1166.6
NC_012721:1395417:141624114162411416972732Burkholderia glumae BGR1 chromosome 2, complete genomehypothetical protein2e-0961.6
NC_010159:3120642:313911731391173140106990Yersinia pestis Angola, complete genomepossibly conserved membrane protein2e-0960.8
NC_016590:1183470:120417612041761204904729Burkholderia sp. YI23 chromosome 3, complete sequencehypothetical protein9e-0855.5
NC_014118:1171411:118871411887141189445732Burkholderia sp. CCGE1002 chromosome chromosome 2, completetype IV / VI secretion system protein, DotU family2e-0754.7
NC_009255:1250939:125453212545321255194663Burkholderia vietnamiensis G4 chromosome 2, complete sequencehypothetical protein3e-0753.9
NC_009255:2044291:206182520618252062487663Burkholderia vietnamiensis G4 chromosome 2, complete sequencehypothetical protein3e-0753.5
NC_007348:2011957:201418120141812014828648Ralstonia eutropha JMP134 chromosome 2, complete sequencehypothetical protein5e-0753.1