Pre_GI: BLASTP Hits

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Query: NC_005126:3812054:3830821 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 3830821, End: 3834171, Length: 3351

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005126:3812054:3843641384364138470123372Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein02067
NC_005126:3812054:3819697381969738230683372Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein02066
NC_012962:3568046:3578063357806335814103348Photorhabdus asymbiotica, complete genomesimilar to putative membrane protein of y. pestis01686
NC_012962:2639500:2648526264852626518913366Photorhabdus asymbiotica, complete genomesimilar to putative membrane protein of y. pestis01558
NC_004088:2966331:2966331296633129697533423Yersinia pestis KIM, complete genomehypothetical protein01209
NC_008149:2802392:2802392280239228058143423Yersinia pestis Nepal516, complete genomemembrane protein01209
NC_009381:1682000:1683661168366116870833423Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein01209
NC_017168:3977767:3977767397776739811893423Yersinia pestis A1122 chromosome, complete genomehypothetical protein01209
NC_017265:2586729:2586729258672925901513423Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein01209
NC_009708:2788855:2820654282065428240763423Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein01206
NC_010465:2820500:2847223284722328506453423Yersinia pseudotuberculosis YPIII, complete genomeImcF domain protein01202
NC_012962:4427000:4437011443701144403073297Photorhabdus asymbiotica, complete genomehypothetical protein01185
NC_005126:4919689:4927191492719149305503360Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein01173
NC_014121:1822895:1834869183486918383423474Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completetype VI secretion system protein ImpL01122
NC_016612:4823529:4823529482352948269993471Klebsiella oxytoca KCTC 1686 chromosome, complete genometype VI secretion system protein ImpL01120
NC_013956:4579759:4579759457975945832923534Pantoea ananatis LMG 20103 chromosome, complete genomehypothetical protein01097
NC_012731:2302974:2318423231842323219263504Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein01095
NC_009648:1487692:1505225150522515085993375Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein01087
NC_014837:3766426:3791881379188137952373357Pantoea sp. At-9b chromosome, complete genomeImcF domain-containing protein01050
NC_017060:125480:1401031401031435193417Rahnella aquatilis HX2 plasmid PRA1, complete sequenceImcF domain-containing protein0997
NC_015062:130359:1432731432731466893417Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequenceImcF domain protein0997
NC_008563:3119284:3133547313354731368853339Escherichia coli APEC O1, complete genomehypothetical protein0982
NC_011283:942594:9464689464689498033336Klebsiella pneumoniae 342 chromosome, complete genomeImcF domain-containing protein0972
NC_010501:3575726:3580163358016335835073345Pseudomonas putida W619, complete genomeImcF domain protein0972
NC_009648:3476000:3487423348742334905003078Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein0969
NC_010067:2529750:2532006253200625353773372Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein0898
NC_013282:2026083:2050468205046820537793312Cronobacter turicensis, complete genomehypothetical protein0896
NC_009648:2465613:2467510246751024709203411Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein0890
NC_012731:3193880:3195777319577731991933417Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein0889
NC_016612:5600177:5603309560330956067283420Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein0887
NC_016845:3238507:3240404324040432438143411Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein0884
NC_009436:3117661:3154619315461931579033285Enterobacter sp. 638, complete genomeImcF domain-containing protein0873
NC_011283:2103500:2116315211631521192812967Klebsiella pneumoniae 342 chromosome, complete genomeImcF-related family protein0845
NC_007348:2011957:2025768202576820292383471Ralstonia eutropha JMP134 chromosome 2, complete sequenceImcF-related:Protein of unknown function DUF12153e-164579
NC_016626:400080:4228984228984264283531Burkholderia sp. YI23 plasmid byi_1p, complete sequencehypothetical protein5e-163575
NC_014539:3619511:3622840362284036263163477Burkholderia sp. CCGE1003 chromosome 1, complete sequenceImcF domain-containing protein2e-161570
NC_012721:1395417:1398827139882714023513525Burkholderia glumae BGR1 chromosome 2, complete genomehypothetical protein2e-160567
NC_010552:592154:6071386071386109563819Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceprotein of unknown function DUF12152e-159563
NC_007347:1:2498224982285963615Ralstonia eutropha JMP134 chromosome 1, complete sequenceImcF-related:Protein of unknown function DUF12154e-159563
NC_012721:240000:2571702571702606913522Burkholderia glumae BGR1 chromosome 2, complete genomehypothetical protein3e-158560
NC_009255:1250939:1271735127173512752893555Burkholderia vietnamiensis G4 chromosome 2, complete sequenceImcF domain-containing protein2e-155551
NC_009255:2044291:2047201204720120507283528Burkholderia vietnamiensis G4 chromosome 2, complete sequenceImcF domain-containing protein3e-154546
NC_014118:1171411:1172998117299811765823585Burkholderia sp. CCGE1002 chromosome chromosome 2, completeImcF domain protein8e-154545
NC_014306:4376012:4390795439079543938933099Erwinia billingiae Eb661, complete genomePutative Type VI secretion system, ImcF domain-containing protein1e-152541
NC_012721:710887:7242107242107277733564Burkholderia glumae BGR1 chromosome 2, complete genomeImcF-related protein6e-147522
NC_009778:1956225:1976281197628119776511371Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein8e-144511
NC_014323:816027:8334198334198372943876Herbaspirillum seropedicae SmR1 chromosome, complete genometransmembrane protein3e-47191
NC_010084:3173757:3173757317375731777043948Burkholderia multivorans ATCC 17616 chromosome 1, completetype VI secretion protein IcmF5e-42173
NC_010804:324396:3470683470683501543087Burkholderia multivorans ATCC 17616 chromosome 1, complete7e-42173
NC_007510:409843:4438784438784478253948Burkholderia sp. 383 chromosome 1, complete sequencehypothetical protein2e-41172
NC_014931:6031645:6031645603164560354903846Variovorax paradoxus EPS chromosome, complete genometype VI secretion protein IcmF3e-41171
NC_014323:4619344:4619344461934446231443801Herbaspirillum seropedicae SmR1 chromosome, complete genometransmembrane protein4e-39164
NC_014310:811977:8415608415608454893930Ralstonia solanacearum PSI07 megaplasmid, complete sequencesecretion system protein3e-37157
NC_003296:941920:9611259611259650663942Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePROBABLE TRANSMEMBRANE PROTEIN3e-36154
NC_005773:106000:1441241441241480443921Pseudomonas syringae pv. phaseolicola 1448A, complete genomeImcF-related family5e-35150
NC_007005:5882205:5882205588220558861373933Pseudomonas syringae pv. syringae B728a, complete genomeImcF-related:Protein of unknown function DUF12157e-35150
NC_014355:1865003:1882727188272718863563630Candidatus Nitrospira defluvii, complete genomehypothetical protein3e-27125
NC_014306:679888:6798886798886835083621Erwinia billingiae Eb661, complete genomeType VI secretion system, IcmF2e-1999.4
NC_012913:1832500:1849033184903318525303498Aggregatibacter aphrophilus NJ8700, complete genometype VI secretion protein IcmF5e-1790.9
NC_005126:349658:3824313824313859763546Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein6e-1790.9
NC_005126:349658:3568883568883604333546Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein6e-1790.5
NC_004578:6138669:6157343615734361609213579Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein1e-1689.7
NC_016816:1823127:1823127182312718267533627Pantoea ananatis LMG 5342, complete genometype VI secretion protein IcmF2e-1688.6
NC_020064:2921809:2921809292180929254533645Serratia marcescens FGI94, complete genometype VI secretion protein IcmF7e-1583.6
NC_010465:429095:4346014346014381343534Yersinia pseudotuberculosis YPIII, complete genometype VI secretion protein IcmF4e-1378.2
NC_009708:372422:3779283779283814613534Yersinia pseudotuberculosis IP 31758 chromosome, complete genomelipoprotein4e-1378.2
NC_003143:4006884:4012390401239040159233534Yersinia pestis CO92, complete genomehypothetical protein4e-1378.2
NC_009381:222735:2282322282322317653534Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein4e-1378.2
NC_014029:3958811:3964317396431739678503534Yersinia pestis Z176003 chromosome, complete genomehypothetical protein4e-1378.2
NC_017154:3898925:3904431390443139079643534Yersinia pestis D106004 chromosome, complete genomehypothetical protein4e-1378.2
NC_017168:1631052:1636558163655816400913534Yersinia pestis A1122 chromosome, complete genomehypothetical protein4e-1378.2
NC_017265:4265659:4278317427831742818503534Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein4e-1378.2
NC_010634:4234932:4246637424663742501703534Yersinia pseudotuberculosis PB1/+, complete genometype VI secretion protein IcmF4e-1378.2
NC_013282:1256769:1280666128066612844513786Cronobacter turicensis, complete genomehypothetical protein4e-1377.8
NC_006155:4302826:4315540431554043190733534Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein4e-1377.8
NC_020829:809457:8248258248258283613537Pseudomonas denitrificans ATCC 13867, complete genometype VI secretion protein IcmF5e-1377.4
NC_007645:4423507:4440744444074444442023459Hahella chejuensis KCTC 2396, complete genomehypothetical protein2e-1275.5
NC_012962:293976:3021943021943057393546Photorhabdus asymbiotica, complete genomehypothetical protein3e-1275.1
NC_011740:1991941:2010341201034120138623522Escherichia fergusonii ATCC 35469, complete genomeIcmF-like protein3e-1172
NC_004605:1092476:1095070109507010985883519Vibrio parahaemolyticus RIMD 2210633 chromosome II, completehypothetical protein2e-1068.9
NC_015057:30743:3074330743341293387Acidobacterium sp. MP5ACTX9 plasmid pACIX901, complete sequenceImcF domain protein1e-0966.6
NC_011205:1186097:1208040120804012115013462Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein1e-0966.2
NC_011274:1094379:1116332111633211198533522Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein1e-0966.2
NC_013892:274297:2849322849322885013570Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein4e-0964.7
NC_015968:4117835:4135929413592941395883660Enterobacter asburiae LF7a chromosome, complete genometype VI secretion protein IcmF5e-0964.3
NC_009439:101174:1011741011741047133540Pseudomonas mendocina ymp, complete genomeImcF domain-containing protein7e-0963.9
NC_011294:1085447:1107409110740911100272619Salmonella enterica subsp. enterica serovar Enteritidis str6e-0963.9
NC_014228:4331327:4338297433829743419023606Xenorhabdus nematophila ATCC 19061, complete genomeConserved hypothetical protein (probable component of SST VI cluster)3e-0861.6
NC_018000:2964500:2989499298949929930293531Sinorhizobium fredii USDA 257 chromosome, complete genomehypothetical protein3e-0861.6
NC_018868:973379:9733799733799769153537Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomehypothetical protein1e-0759.7
NC_004917:241053:2432372432372467913555Helicobacter hepaticus ATCC 51449, complete genomehypothetical protein7e-0757