Pre_GI: BLASTP Hits

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Query: NC_005126:3812054:3811002 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 3811002, End: 3812090, Length: 1089

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012962:3568046:3575095357509535761471053Photorhabdus asymbiotica, complete genomehypothetical protein2e-142505
NC_010465:2820500:2840999284099928420841086Yersinia pseudotuberculosis YPIII, complete genometype VI secretion protein, VC_A0111 family5e-101367
NC_017265:2557476:2580505258050525815901086Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein9e-101367
NC_017168:3948514:3971543397154339726281086Yersinia pestis A1122 chromosome, complete genomehypothetical protein9e-101367
NC_014029:1760948:1760948176094817620331086Yersinia pestis Z176003 chromosome, complete genomehypothetical protein9e-101367
NC_004088:2937077:2960107296010729611921086Yersinia pestis KIM, complete genomehypothetical protein9e-101367
NC_009708:2788855:2810553281055328116381086Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein1e-100366
NC_011283:942594:9435379435379446191083Klebsiella pneumoniae 342 chromosome, complete genometype VI secretion protein5e-100364
NC_009381:1655731:1677437167743716785221086Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein1e-99363
NC_009648:3476000:3494988349498834960701083Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein9e-98357
NC_011742:3057444:3060870306087030619581089Escherichia coli S88 chromosome, complete genomehypothetical protein2e-95349
NC_008253:2965573:2969200296920029702791080Escherichia coli 536, complete genomehypothetical protein5e-94344
NC_010501:3575726:3575726357572635768231098Pseudomonas putida W619, complete genometype VI secretion protein, VC_A0111 family7e-94344
NC_017060:125480:1453521453521464341083Rahnella aquatilis HX2 plasmid PRA1, complete sequencetype VI secretion protein2e-93342
NC_015062:130359:1485221485221496041083Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequencetype VI secretion protein, VC_A0111 family2e-93342
NC_012962:4427000:4432530443253044335611032Photorhabdus asymbiotica, complete genomehypothetical protein3e-92338
NC_014837:3766426:3787464378746437885341071Pantoea sp. At-9b chromosome, complete genometype VI secretion protein1e-90333
NC_014121:1822895:1842623184262318437081086Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completetype VI secretion system protein ImpH2e-90332
NC_012731:2302974:2326872232687223279571086Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein5e-90331
NC_013971:465318:4670514670514681331083Erwinia amylovora ATCC 49946 chromosome, complete genomehypothetical protein6e-86317
NC_009778:1956225:1973284197328419743661083Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein1e-84313
NC_013282:2026083:2055691205569120567731083Cronobacter turicensis, complete genomehypothetical protein4e-83308
NC_011283:2103500:2121133212113321222241092Klebsiella pneumoniae 342 chromosome, complete genometype VI secretion protein3e-78291
NC_014306:4376012:4395682439568243967071026Erwinia billingiae Eb661, complete genomeConserved uncharacterized protein8e-77287
NC_007348:2011957:2032659203265920337081050Ralstonia eutropha JMP134 chromosome 2, complete sequenceProtein of unknown function DUF13051e-51204
NC_010552:592154:6143696143696154931125Burkholderia ambifaria MC40-6 chromosome 2, complete sequencetype VI secretion protein, VC_A0111 family6e-49195
NC_014539:3619511:3618414361841436195141101Burkholderia sp. CCGE1003 chromosome 1, complete sequencetype VI secretion protein3e-47189
NC_016626:400080:4282424282424293061065Burkholderia sp. YI23 plasmid byi_1p, complete sequencetype VI secretion protein2e-46186
NC_012721:1395417:1394299139429913954201122Burkholderia glumae BGR1 chromosome 2, complete genomehypothetical protein6e-45181
NC_009255:2044291:2044291204429120453071017Burkholderia vietnamiensis G4 chromosome 2, complete sequencehypothetical protein3e-42172
NC_009255:1250939:1277183127718312781991017Burkholderia vietnamiensis G4 chromosome 2, complete sequencehypothetical protein3e-42172
NC_020260:1993344:200759120075912008268678Cronobacter sakazakii Sp291, complete genometype VI secretion protein2e-1997.1
NC_013892:274297:2742972742972753491053Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein2e-1893.6
NC_008570:1986466:200289620028962003894999Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomehypothetical protein2e-1893.6
NC_014228:4331327:4351521435152143525731053Xenorhabdus nematophila ATCC 19061, complete genomeconserved hypothetical protein (probable component of the SST VI cluster)2e-1790.1
NC_009348:2631759:2630791263079126317951005Aeromonas salmonicida subsp. salmonicida A449, complete genomehypothetical protein3e-1686.7
NC_011274:1129686:1128634112863411297281095Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein2e-1584
NC_008253:257059:2570592570592581081050Escherichia coli 536, complete genomehypothetical protein3e-1582.8
NC_011751:256830:2558172558172568661050Escherichia coli UMN026 chromosome, complete genomehypothetical protein3e-1582.8
NC_016822:267758:2667122667122677941083Shigella sonnei 53G, complete genomehypothetical protein5e-1582
NC_014355:1865003:1896587189658718976511065Candidatus Nitrospira defluvii, complete genomehypothetical protein9e-1581.3
NC_011745:258727:2577142577142587631050Escherichia coli ED1a chromosome, complete genomehypothetical protein1e-1480.9
NC_008563:258725:2577122577122587611050Escherichia coli APEC O1, complete genomehypothetical protein1e-1480.9
NC_007946:258747:2577342577342587831050Escherichia coli UTI89, complete genomehypothetical protein1e-1480.9
NC_011742:258746:2577332577332587821050Escherichia coli S88 chromosome, complete genomehypothetical protein1e-1480.9
NC_015968:4117835:414967541496754150631957Enterobacter asburiae LF7a chromosome, complete genometype VI secretion protein1e-1480.9
NC_013421:1143500:116200111620011162999999Pectobacterium wasabiae WPP163, complete genometype VI secretion protein, VC_A0111 family6e-1479
NC_004578:2797493:2811942281194228129491008Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein2e-1377.4
NC_013592:1424560:1442701144270114437141014Dickeya dadantii Ech586, complete genometype VI secretion protein, VC_A0111 family2e-1377
NC_002947:4604582:4606312460631246073281017Pseudomonas putida KT2440, complete genomehypothetical protein2e-1377
NC_005126:349658:395492395492396472981Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein7e-1375.1
NC_009656:3733913:3739524373952437405311008Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein1e-1274.3
NC_008314:2744553:2743552274355227445981047Ralstonia eutropha H16 chromosome 2, complete sequencequinoprotein dehydrogenase7e-1271.6
NC_012997:1689583:1703569170356917046841116Teredinibacter turnerae T7901, complete genometype VI secretion protein, VC_A0111 family2e-1170.5
NC_012913:1832500:184208218420821843080999Aggregatibacter aphrophilus NJ8700, complete genometype VI secretion protein, family6e-1168.9
NC_012779:2619871:2637980263798026390051026Edwardsiella ictaluri 93-146, complete genomehypothetical protein2e-1067.4
NC_002947:3492379:3491345349134534924151071Pseudomonas putida KT2440, complete genomehypothetical protein2e-1067
NC_010322:3084834:3104873310487331059431071Pseudomonas putida GB-1 chromosome, complete genometype VI secretion protein3e-1066.6
NC_007511:1780500:1799185179918518002881104Burkholderia sp. 383 chromosome 2, complete sequenceprotein of unknown function DUF13053e-1066.2
NC_013855:196778:2011962011962022331038Azospirillum sp. B510 plasmid pAB510a, complete sequencehypothetical protein2e-0860.1
NC_018868:973379:9849389849389860801143Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomehypothetical protein1e-0758.2
NC_006349:400807:4008074008074021771371Burkholderia mallei ATCC 23344 chromosome 2, complete sequencehypothetical protein4e-0755.8
NC_009079:402891:4028914028914043691479Burkholderia mallei NCTC 10247 chromosome I, complete sequencehypothetical protein5e-0755.8
NC_008835:1827905:1830848183084818323261479Burkholderia mallei NCTC 10229 chromosome I, complete sequencehypothetical protein5e-0755.8
NC_014323:4619344:4628948462894846300361089Herbaspirillum seropedicae SmR1 chromosome, complete genomehypothetical protein5e-0755.8
NC_007963:2555012:255402325540232555015993Chromohalobacter salexigens DSM 3043, complete genomeprotein of unknown function DUF13056e-0755.5
NC_016816:1823127:1842920184292018439691050Pantoea ananatis LMG 5342, complete genometype VI secretion system, core protein2e-0653.9
NC_009436:3117661:3152243315224331546182376Enterobacter sp. 638, complete genomeImpA domain-containing protein4e-0652.8