Pre_GI: BLASTP Hits

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Query: NC_005126:3485330:3487398 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 3487398, End: 3488144, Length: 747

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012962:1827000:184286118428611843607747Photorhabdus asymbiotica, complete genomecobalamin synthase5e-84310
NC_015663:4950000:495002249500224950762741Enterobacter aerogenes KCTC 2190 chromosome, complete genomecobalamin synthase2e-53209
NC_012947:1769438:176943817694381770181744Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completecobalamin synthase2e-52206
NC_012967:1967675:200247920024792003222744Escherichia coli B str. REL606 chromosome, complete genomecobalamin synthase2e-52206
AC_000091:2027648:206661620666162067359744Escherichia coli W3110 DNA, complete genomecobalamin 5'-phosphate synthase2e-52206
NC_010473:2119480:215351121535112154254744Escherichia coli str. K-12 substr. DH10B, complete genomecobalamin 5'-phosphate synthase2e-52206
NC_000913:2042935:206250320625032063246744Escherichia coli K12, complete genomecobalamin synthase2e-52206
NC_011745:2209288:227152022715202272263744Escherichia coli ED1a chromosome, complete genomecobalamin synthase2e-52206
NC_012759:1920955:195498619549861955729744Escherichia coli BW2952 chromosome, complete genomecobalamin synthase2e-52206
NC_011601:2139188:217951421795142180257744Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomecobalamin synthase6e-52204
NC_009800:2083465:210308121030812103824744Escherichia coli HS, complete genomecobalamin 5'-phosphate synthase6e-52204
AP010958:2455052:245956624595662460309744Escherichia coli O103:H2 str. 12009 DNA, complete genomecobalamin 5'-phosphate synthase6e-52204
NC_013353:2455052:245956624595662460309744Escherichia coli O103:H2 str. 12009, complete genomecobalamin 5'-phosphate synthase6e-52204
NC_016822:2201388:224259522425952243338744Shigella sonnei 53G, complete genomecobalamin synthase6e-52204
NC_004631:948054:948054948054948797744Salmonella enterica subsp. enterica serovar Typhi Ty2, completecobalamin synthase7e-52203
CP002797:2062006:206546920654692066212744Escherichia coli NA114, complete genomeCobalamin synthase8e-52203
NC_008253:2056734:207184420718442072587744Escherichia coli 536, complete genomecobalamin [5'-phosphate] synthase8e-52203
NC_004431:2304280:231936723193672320146780Escherichia coli CFT073, complete genomecobalamin synthase1e-51203
NC_007946:2155454:217053221705322171311780Escherichia coli UTI89, complete genomecobalamin 5'-phosphate synthase / cobalamin synthase1e-51203
NC_016832:948029:948029948029948751723Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Cobalamin synthase2e-50199
NC_011094:2061000:207792920779292078672744Salmonella enterica subsp. enterica serovar Schwarzengrund strcobalamin synthase3e-50198
NC_013892:853366:853366853366854124759Xenorhabdus bovienii SS-2004 chromosome, complete genomecobalamin 5'-phosphate synthase3e-50198
NC_011149:2040396:205624120562412056963723Salmonella enterica subsp. enterica serovar Agona str. SL483,cobalamin 5'-phosphate synthase3e-50198
NC_010468:1816359:181690118169011817644744Escherichia coli ATCC 8739, complete genomecobalamin 5'-phosphate synthase2e-48192
NC_017068:1327025:132803813280381328793756Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative cobalamin 5'-phosphate synthase2e-1996.3
NC_003030:1510000:152632615263261527084759Clostridium acetobutylicum ATCC 824, complete genomecobalamin synthase3e-1892
NC_015687:1508664:152792715279271528685759Clostridium acetobutylicum DSM 1731 chromosome, complete genomecobalamin synthase3e-1892
NC_017295:1507956:152574015257401526498759Clostridium acetobutylicum EA 2018 chromosome, complete genomecobalamin synthase3e-1892
NC_012488:1159463:116075811607581161504747Listeria monocytogenes Clip81459, complete genomecobalamin (5'-phosphatase) synthetase8e-1890.9
NC_013766:1202713:120271312027131203459747Listeria monocytogenes 08-5578 chromosome, complete genomehypothetical protein2e-1789.7
NC_009253:2927802:293128329312832932032750Desulfotomaculum reducens MI-1 chromosome, complete genomecobalamin 5'-phosphate synthase3e-1375.5
NC_015565:624298:642658642658643407750Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completecobalamin synthase2e-1273.2
NC_014632:567289:578648578648579397750Ilyobacter polytropus DSM 2926 chromosome, complete genomecobalamin-5'-phosphate synthase6e-1271.2
NC_013517:1055854:108700010870001087728729Sebaldella termitidis ATCC 33386, complete genomecobalamin 5'-phosphate synthase8e-1270.9
NC_011296:1151346:115281211528121153594783Thermodesulfovibrio yellowstonii DSM 11347, complete genomecobalamin 5'-phosphate synthase2e-1169.3
NC_016148:141011:156052156052156792741Thermovirga lienii DSM 17291 chromosome, complete genomecobalamin 5'-phosphate synthase7e-1167.8
NC_016751:1700164:171404017140401714780741Marinitoga piezophila KA3 chromosome, complete genomecobalamin 5''-phosphate synthase/cobalamin synthase9e-1167.4
NC_010506:4951500:495452049545204955293774Shewanella woodyi ATCC 51908, complete genomecobalamin 5'-phosphate synthase1e-1066.6
NC_012491:1263469:126851212685121269252741Brevibacillus brevis NBRC 100599, complete genomecobalamin (5'-phosphate) synthase4e-1065.1
NC_008321:977500:998408998408999196789Shewanella sp. MR-4, complete genomecobalamin 5'-phosphate synthase4e-1065.1
NC_015437:1038476:104171310417131042540828Selenomonas sputigena ATCC 35185 chromosome, complete genomeCobalamin synthase7e-0960.8
NC_012969:142000:161076161076161837762Methylovorus glucosetrophus SIP3-4 chromosome, complete genomecobalamin 5'-phosphate synthase3e-0858.9
NC_014622:1514416:152548615254861526355870Paenibacillus polymyxa SC2 chromosome, complete genomecobalamin synthase3e-0652.4
NC_014483:1376500:138773413877341388603870Paenibacillus polymyxa E681 chromosome, complete genomeCobalamin synthase4e-0652