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Query: NC_005126:3204980:3213573 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 3213573, End: 3213887, Length: 315

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013722:1816561:185500818550081855589582Xanthomonas albilineans, complete genomeputative invertase/recombinase protein2e-24111
NC_009092:4585784:459390045939004594484585Shewanella loihica PV-4, complete genomeResolvase, N-terminal domain4e-1890.1
NC_017986:1862408:187575318757531876328576Pseudomonas putida ND6 chromosome, complete genomeputative DNA invertase8e-1785.9
NC_012660:5793200:580082258008225801457636Pseudomonas fluorescens SBW25 chromosome, complete genomeputative DNA invertase2e-1684.3
NC_009256:277020:297910297910298500591Burkholderia vietnamiensis G4 chromosome 1, complete sequenceresolvase domain-containing protein1e-1478.2
NC_008740:257434:278266278266278829564Marinobacter aquaeolei VT8, complete genomeResolvase, N-terminal domain1e-1168.6
NC_008740:443274:465549465549466109561Marinobacter aquaeolei VT8, complete genomeResolvase, N-terminal domain6e-1062.8
NC_015259:734795:741517741517742083567Polymorphum gilvum SL003B-26A1 chromosome, complete genomeInvertase recombinase-like protein1e-0858.2
NC_013446:4281250:429116142911614291727567Comamonas testosteroni CNB-2, complete genomeResolvase-like protein2e-0858.2
NC_015259:673662:684998684998685570573Polymorphum gilvum SL003B-26A1 chromosome, complete genomeInvertase recombinase-like protein2e-0754.3
NC_013037:2851940:285981428598142860419606Dyadobacter fermentans DSM 18053, complete genomeResolvase domain3e-0753.9
NC_008268:3335035:334145233414523341988537Rhodococcus sp. RHA1, complete genomeresolvase3e-0753.9
NC_005230:32647:418454184542492648Synechocystis sp. PCC 6803 plasmid pSYSA, complete sequenceresolvase7e-0752.8
NC_007626:3393940:342955834295583430121564Magnetospirillum magneticum AMB-1, complete genomeSite-specific recombinase7e-0752.8
NC_009092:1127000:114712611471261147743618Shewanella loihica PV-4, complete genomeResolvase, N-terminal domain6e-0752.8
NC_010410:3606826:362917936291793629838660Acinetobacter baumannii AYE, complete genomeResolvase1e-0651.6
NC_011586:268927:307401307401308060660Acinetobacter baumannii AB0057 chromosome, complete genomeresolvase IS261e-0651.6
NC_017387:247462:256497256497257156660Acinetobacter baumannii TCDC-AB0715 chromosome, complete genomeresolvase IS261e-0651.6
NC_004349:3938:167331673317290558Shewanella oneidensis MR-1 plasmid pMR-1, complete sequenceISSod9, DNA-invertase1e-0651.6
NC_010514:6000:252892528925870582Methylobacterium radiotolerans JCM 2831 plasmid pMRAD03, completeResolvase domain protein1e-0651.6
NC_018080:3055358:307262430726243073181558Pseudomonas aeruginosa DK2 chromosome, complete genomeresolvase domain-containing protein2e-0650.8
NC_008786:1553833:156447815644781565035558Verminephrobacter eiseniae EF01-2, complete genomeResolvase, N-terminal domain3e-0650.8
NC_015671:255808:266131266131266709579Cellvibrio gilvus ATCC 13127 chromosome, complete genomeResolvase domain-containing protein3e-0650.4
NC_007626:3522265:359093035909303591538609Magnetospirillum magneticum AMB-1, complete genomeSite-specific recombinase7e-0649.3