Pre_GI: BLASTP Hits

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Query: NC_005126:274000:293814 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 293814, End: 295049, Length: 1236

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005070:1486496:1506298150629815097623465Synechococcus sp. WH 8102, complete genomehypothetical protein7e-27122
NC_014721:11437:3007430074323382265Caldicellulosiruptor kristjanssonii 177R1B chromosome, completeregulator of chromosome condensation rcc17e-24112
NC_005070:1486496:1510104151010415122482145Synechococcus sp. WH 8102, complete genomehypothetical protein9e-24111
NC_005070:2181000:2187339218733921892941956Synechococcus sp. WH 8102, complete genomepossible hemolysin-type calcium-binding protei8e-22105
NC_011146:2200142:2220943222094322246113669Geobacter bemidjiensis Bem, complete genomeregulator of chromosome condensation RCC15e-21102
NC_014720:1877500:1880596188059618828272232Caldicellulosiruptor kronotskyensis 2002 chromosome, completeregulator of chromosome condensation rcc11e-1894.4
NC_007492:1735595:1744268174426817467482481Pseudomonas fluorescens PfO-1, complete genomehypothetical protein3e-1893.2
NC_012034:1049454:1060954106095410631852232Anaerocellum thermophilum DSM 6725, complete genomeregulator of chromosome condensation RCC11e-1791.7
NC_016791:1620858:1639094163909416420512958Clostridium sp. BNL1100 chromosome, complete genomeRCC1 domain-containing protein, alpha-tubulin suppressor8e-1891.7
NC_016627:793583:818876818876819640765Clostridium clariflavum DSM 19732 chromosome, complete genomehypothetical protein3e-1790.1
NC_015635:5154730:5177897517789751802002304Microlunatus phosphovorus NM-1, complete genomehypothetical protein9e-1788.2
NC_008541:3579442:3585000358500035883893390Arthrobacter sp. FB24 chromosome 1, complete sequenceIg family protein3e-1686.7
NC_012034:2676943:2689917268991726910081092Anaerocellum thermophilum DSM 6725, complete genomeregulator of chromosome condensation RCC13e-1583.2
NC_012034:2676943:2684188268418826852791092Anaerocellum thermophilum DSM 6725, complete genomeregulator of chromosome condensation RCC14e-1582.8
NC_015711:6327792:6337202633720263397902589Myxococcus fulvus HW-1 chromosome, complete genomeRCC1 repeat-containing protein2e-1377
NC_012491:1838432:186314818631481864119972Brevibacillus brevis NBRC 100599, complete genomehypothetical protein4e-1376.3
NC_020126:3426439:3442803344280334450462244Myxococcus stipitatus DSM 14675, complete genomeRCC1 repeat-containing protein4e-1376.3
NC_017030:4062699:4071984407198440742182235Corallococcus coralloides DSM 2259 chromosome, complete genomehypothetical protein1e-1274.7
NC_014623:9363409:9373716937371693760432328Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeregulator of chromosome condensation1e-1171.2
NC_015949:2418232:243077424307742431385612Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeregulator of chromosome condensation RCC12e-1170.5
NC_014623:9976000:9983190998319099843381149Stigmatella aurantiaca DW4/3-1 chromosome, complete genomebnr repeat domain-containing protein5e-1169.3
NC_009464:2015035:2031706203170620330431338Uncultured methanogenic archaeon RC-I, complete genomepredicted regulator of chromosome condensation6e-1168.9
NC_016935:1365463:1438197143819714418143618Paenibacillus mucilaginosus 3016 chromosome, complete genomeprotein ChiA126e-1168.9
NC_017030:3981310:3981310398131039829621653Corallococcus coralloides DSM 2259 chromosome, complete genomehypothetical protein3e-1067
NC_008095:2497842:2497842249784225008082967Myxococcus xanthus DK 1622, complete genomeputative lipoprotein2e-0963.9
NC_015573:893862:8938628938628980674206Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeIg domain-containing protein group 2 domain-containing protein4e-0963.2
NC_011830:3528665:3530497353049735326172121Desulfitobacterium hafniense DCB-2, complete genomeputative cell wall binding repeat 2-containing protein4e-0963.2
NC_014483:1431352:1437083143708314385581476Paenibacillus polymyxa E681 chromosome, complete genomeAlpha-tubulin suppressor and related RCC1 domain-containing protein4e-0962.8
NC_015690:7518732:7529439752943975309381500Paenibacillus mucilaginosus KNP414 chromosome, complete genomehypothetical protein1e-0861.6
NC_014623:2283253:2291698229169822938962199Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeregulator of chromosome condensation-like protein1e-0758.2
NC_008095:6759500:6776678677667867786872010Myxococcus xanthus DK 1622, complete genomeRCC1 repeat domain protein4e-0756.2
NC_009464:1397739:1404721140472114060641344Uncultured methanogenic archaeon RC-I, complete genomepredicted regulator of chromosome condensation7e-0755.5
NC_009464:2288500:2297214229721422985391326Uncultured methanogenic archaeon RC-I, complete genomepredicted regulator of chromosome condensation2e-0654.3
NC_010424:697187:7756607756607773031644Candidatus Desulforudis audaxviator MP104C, complete genomecopper amine oxidase domain protein4e-0652.8