Pre_GI: BLASTP Hits

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Query: NC_005126:274000:290628 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 290628, End: 290918, Length: 291

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004337:3590323:379242237924223792697276Shigella flexneri 2a str. 301, complete genomeDNA-directed RNA polymerase omega subunit2e-29127
NC_020260:4029951:404756340475634047838276Cronobacter sakazakii Sp291, complete genomeDNA-directed RNA polymerase subunit omega9e-29125
NC_009778:4014026:403162540316254031900276Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein9e-29125
NC_009648:4359875:437883943788394379114276Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeDNA-directed RNA polymerase subunit omega9e-29125
NC_011094:3778000:381893838189383819213276Salmonella enterica subsp. enterica serovar Schwarzengrund strDNA-directed RNA polymerase subunit omega9e-29125
NC_011283:105245:105245105245105520276Klebsiella pneumoniae 342 chromosome, complete genomeDNA-directed RNA polymerase subunit omega9e-29125
NC_012731:5074000:509301950930195093294276Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeDNA-directed RNA polymerase subunit omega9e-29125
NC_016845:5162481:518149451814945181769276Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,DNA-directed RNA polymerase subunit omega9e-29125
NC_013716:4306695:439799943979994398274276Citrobacter rodentium ICC168, complete genomeDNA-directed RNA polymerase omega chain8e-29125
NC_013508:26348:324733247332748276Edwardsiella tarda EIB202, complete genomeDNA-directed RNA polymerase, subunit omega6e-29125
NC_010694:63654:657976579766072276Erwinia tasmaniensis, complete genomeDNA-directed RNA polymerase omega chain2e-28124
NC_013961:73037:751807518075455276Erwinia amylovora, complete genomeDNA-directed RNA polymerase omega chain2e-28124
NC_013971:73037:751807518075455276Erwinia amylovora ATCC 49946 chromosome, complete genomeDNA-directed RNA polymerase subunit omega2e-28124
NC_020064:4751097:477141747714174771692276Serratia marcescens FGI94, complete genomeDNA-directed RNA polymerase, omega subunit2e-27121
NC_008800:36500:577415774158016276Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,DNA-directed RNA polymerase subunit omega2e-27121
NC_009832:5369566:539112653911265391401276Serratia proteamaculans 568, complete genomeDNA-directed RNA polymerase, omega subunit2e-27120
NC_016816:127802:129931129931130206276Pantoea ananatis LMG 5342, complete genomeDNA-directed RNA polymerase subunit omega3e-27120
NC_013956:4326388:434453943445394344814276Pantoea ananatis LMG 20103 chromosome, complete genomeRpoZ3e-27120
NC_008309:1628939:165109316510931651365273Haemophilus somnus 129PT, complete genomeDNA-directed RNA polymerase, omega chain3e-21100
NC_014366:354000:373619373619373861243Gamma proteobacterium HdN1, complete genomeDNA-directed RNA polymerase omega chain1e-1685.1
NC_007912:4661141:468121346812134681485273Saccharophagus degradans 2-40, complete genomeDNA-directed RNA polymerase, omega subunit2e-1684.7
NC_014532:3967463:398471239847123984990279Halomonas elongata DSM 2581, complete genomeDNA-directed RNA polymerase subunit omega6e-1579.3
NC_014752:617987:620224620224620430207Neisseria lactamica ST-640, complete genomeDNA-directed RNA polymerase omega chain9e-1165.5
NC_015722:4539:507750775448372Candidatus Midichloria mitochondrii IricVA chromosome, completeDNA-directed RNA polymerase subunit omega1e-0858.9
NC_007498:1491223:150726115072611507467207Pelobacter carbinolicus DSM 2380, complete genomeDNA-directed RNA polymerase, omega subunit1e-0858.2
NC_015381:992401:101896410189641019167204Burkholderia gladioli BSR3 chromosome 1, complete sequenceDNA-directed RNA polymerase subunit omega3e-0857.4
NC_009483:3727490:373295637329563733165210Geobacter uraniireducens Rf4 chromosome, complete genomeDNA-directed RNA polymerase subunit omega3e-0857
NC_011979:2352961:237947523794752379684210Geobacter sp. FRC-32, complete genomeDNA-directed RNA polymerase, omega subunit5e-0856.2
NC_009138:2110500:213021721302172130420204Herminiimonas arsenicoxydans, complete genomeDNA-directed RNA polymerase omega chain (RNAP omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit)6e-0856.2
NC_007880:1456705:146332214633221463540219Francisella tularensis subsp. holarctica, complete genomeDNA-directed RNA polymerase omega subunit1e-0755.5
NC_016937:707279:721959721959722177219Francisella tularensis subsp. tularensis TI0902 chromosome,DNA-directed RNA polymerase subunit omega2e-0754.7
NC_016933:783938:797866797866798084219Francisella tularensis TIGB03 chromosome, complete genomeDNA-directed RNA polymerase subunit omega2e-0754.7
NC_008601:631504:645826645826646044219Francisella tularensis subsp. novicida U112, complete genomeDNA-directed RNA polymerase, subunit K/omega2e-0754.7
NC_006570:707280:721960721960722178219Francisella tularensis subsp. tularensis Schu 4, complete genomeDNA-directed RNA polymerase omega subunit2e-0754.7
NC_008245:707984:721912721912722130219Francisella tularensis subsp. tularensis FSC 198, complete genomeDNA-directed RNA polymerase omega subunit2e-0754.7
NC_007517:2632233:263444326344432634652210Geobacter metallireducens GS-15, complete genomeRNA polymerase, omega subunit5e-0753.1
NC_015696:1749863:175984117598411760059219Francisella sp. TX077308 chromosome, complete genomeDNA-directed RNA polymerase subunit omega8e-0752.4
NC_010336:213148:240634240634240852219Francisella philomiragia subsp. philomiragia ATCC 25017, completeDNA-directed RNA polymerase, subunit K/omega1e-0651.6