Pre_GI: BLASTP Hits

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Query: NC_005126:1315474:1348802 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 1348802, End: 1350334, Length: 1533

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009832:4482500:4487979448797944896611683Serratia proteamaculans 568, complete genomeRelaxase5e-91335
NC_009832:4564752:4573178457317845748871710Serratia proteamaculans 568, complete genomeRelaxase9e-89327
NC_014029:331919:3999813999814016901710Yersinia pestis Z176003 chromosome, complete genomehypothetical protein7e-86318
NC_009832:426993:4482924482924500041713Serratia proteamaculans 568, complete genomeRelaxase2e-84313
NC_012125:4559990:4575681457568145772461566Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein1e-75284
NC_016832:4482437:4498105449810544996941590Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein2e-75283
NC_003198:4513900:4527028452702845286171590Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein2e-75283
NC_004631:4494000:4509837450983745114261590Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein2e-75283
NC_004547:667988:6856966856966872941599Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein3e-74280
NC_009801:3374501:3374501337450133761561656Escherichia coli E24377A, complete genomehelicase/Zfx / Zfy transcription activation region domain protein5e-72272
NC_012779:346998:3771273771273787191593Edwardsiella ictaluri 93-146, complete genomehypothetical protein8e-63241
NC_012214:537000:5558525558525573541503Erwinia pyrifoliae Ep1/96, complete genomehypothetical protein9e-59228
NC_013421:701005:7426947426947441511458Pectobacterium wasabiae WPP163, complete genomeprotein of unknown function DUF15281e-56221
NC_010554:2789722:2795085279508527966771593Proteus mirabilis HI4320, complete genomehelicase2e-55217
NC_016816:4129299:4129299412929941308431545Pantoea ananatis LMG 5342, complete genomeputative helicase/relaxase1e-53211
NC_012880:3529017:3551393355139335528291437Dickeya dadantii Ech703, complete genomeprotein of unknown function DUF15283e-52206
NC_014228:3391500:339158733915873392480894Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein4e-52206
NC_013892:1503162:151686915168691517762894Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein8e-52205
NC_016845:4498097:4504028450402845053171290Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein5e-41169
NC_013971:3117000:3117124311712431185631440Erwinia amylovora ATCC 49946 chromosome, complete genomemembrane protein2e-30134
NC_007005:1605000:1609367160936716112711905Pseudomonas syringae pv. syringae B728a, complete genomeProtein of unknown function DUF1528:Relaxase1e-27125
NC_012912:483390:4914434914434932421800Dickeya zeae Ech1591, complete genomeRelaxase1e-26121
NC_004578:895019:9009889009889029161929Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein2e-26120
NC_012913:1041969:1061129106112910630151887Aggregatibacter aphrophilus NJ8700, complete genomerelaxase7e-26119
NC_004129:5481629:5489951548995154918371887Pseudomonas fluorescens Pf-5, complete genomehypothetical protein2e-25117
NC_008825:2564965:2568977256897725708151839Methylibium petroleiphilum PM1, complete genomehypothetical protein3e-25116
NC_007005:830467:838293838293839249957Pseudomonas syringae pv. syringae B728a, complete genomeRelaxase3e-25116
NC_015740:1291739:1291739129173912935951857Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein1e-24115
NC_011662:1017933:1022284102228410241341851Thauera sp. MZ1T, complete genomeRelaxase1e-24114
NC_006513:1379735:1423016142301614248301815Azoarcus sp. EbN1, complete genomehypothetical protein3e-24113
NC_016830:3869572:3883326388332638850501725Pseudomonas fluorescens F113 chromosome, complete genomerelaxase4e-24113
NC_007492:3462929:3471454347145434731811728Pseudomonas fluorescens PfO-1, complete genomehypothetical protein1e-23111
NC_012660:2045398:2091920209192020936441725Pseudomonas fluorescens SBW25 chromosome, complete genomehypothetical protein2e-23111
NC_010170:1551923:1557786155778615596331848Bordetella petrii, complete genomeputative helicase2e-23110
NC_007086:1224867:1249163124916312501851023Xanthomonas campestris pv. campestris str. 8004, complete genomehypothetical protein2e-23110
NC_003902:3666544:3697611369761136986331023Xanthomonas campestris pv. campestris str. ATCC 33913, completehypothetical protein2e-23110
NC_014910:4207227:4208814420881442106761863Alicycliphilus denitrificans BC chromosome, complete genomerelaxase4e-23109
NC_009656:4527457:4655680465568046576111932Pseudomonas aeruginosa PA7 chromosome, complete genomerelaxase5e-23109
NC_009656:4527457:4570189457018945721081920Pseudomonas aeruginosa PA7 chromosome, complete genomerelaxase9e-23108
NC_008782:1308007:1323801132380113256841884Acidovorax sp. JS42, complete genomeRelaxase1e-22108
NC_012691:2614603:2677917267791726797731857Tolumonas auensis DSM 9187, complete genomeRelaxase2e-22107
NC_013421:1744928:1754222175422217560031782Pectobacterium wasabiae WPP163, complete genomeRelaxase2e-22107
NC_010067:3056774:3073338307333830749571620Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein9e-22105
NC_015726:2862500:2869564286956428714081845Cupriavidus necator N-1 chromosome 1, complete sequencehypothetical protein7e-22105
NC_014532:3596097:3630268363026836321421875Halomonas elongata DSM 2581, complete genomerelaxase1e-21104
NC_015379:2417312:2429114242911424309311818Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,hypothetical protein3e-21103
NC_013716:3512950:3518153351815335197721620Citrobacter rodentium ICC168, complete genomehypothetical protein9e-21102
NC_010002:4572573:4579413457941345812661854Delftia acidovorans SPH-1, complete genomeRelaxase1e-20101
NC_009792:3245368:3263530326353032647921263Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein1e-20101
NC_010501:3671517:3679488367948836811971710Pseudomonas putida W619, complete genomeRelaxase3e-20100
NC_014640:1179382:1185130118513011870071878Achromobacter xylosoxidans A8 chromosome, complete genomehypothetical protein3e-20100
NC_010170:1152131:1155741115574111576031863Bordetella petrii, complete genomeputative helicase3e-20100
NC_008344:49039:6932869328711931866Nitrosomonas eutropha C91, complete genomeRelaxase1e-1998.2
NC_011149:4677412:4680855468085546821711317Salmonella enterica subsp. enterica serovar Agona str. SL483,2e-1997.4
NC_017986:409899:4169414169414186681728Pseudomonas putida ND6 chromosome, complete genomerelaxase2e-1997.4
NC_012731:560199:5776945776945792861593Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein1e-1895.1
NC_009648:5119271:5133416513341651350051590Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein1e-1894.7
NC_010688:2850164:2856463285646328583911929Xanthomonas campestris pv. campestris, complete genomehypothetical protein3e-1893.6
NC_012560:3698697:3718384371838437202791896Azotobacter vinelandii DJ, complete genomeRelaxase-related protein8e-1892.4
NC_021150:3698696:3718383371838337202781896Azotobacter vinelandii CA6, complete genomeRelaxase-related protein8e-1892.4
NC_009512:3334579:3342578334257833443651788Pseudomonas putida F1, complete genomeRelaxase1e-1791.7
NC_015733:2581324:2624808262480826265351728Pseudomonas putida S16 chromosome, complete genomerelaxase2e-1790.9
NC_013416:820989:826945826945827487543Aggregatibacter actinomycetemcomitans D11S-1, complete genomerelaxase1e-1688.6
NC_002488:1638946:1671676167167616735261851Xylella fastidiosa 9a5c, complete genomehypothetical protein3e-1584
NC_018691:2214464:2216028221602822178421815Alcanivorax dieselolei B5 chromosome, complete genomeRelaxase2e-1377.8
NC_008739:41793:5382653826557001875Marinobacter aquaeolei VT8 plasmid pMAQU02, complete sequenceRelaxase5e-1272.8
NC_005773:4282840:4312613431261343141211509Pseudomonas syringae pv. phaseolicola 1448A, complete genomehypothetical protein2e-0964.3
NC_009434:3611738:3686311368631136875551245Pseudomonas stutzeri A1501, complete genomeHD-superfamily hydrolase9e-0755.5