Pre_GI: BLASTP Hits

Some Help

Query: NC_005126:1265071:1276114 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 1276114, End: 1276716, Length: 603

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016845:4046142:4057358405735840588451488Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative reverse transcriptase/maturase9e-1993.2
NC_016845:2306744:2323071232307123245581488Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative reverse transcriptase/maturase9e-1993.2
NC_016845:1773416:1779858177985817813451488Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative reverse transcriptase/maturase9e-1993.2
NC_011001:1145508:1153138115313811546701533Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative reverse transcriptase-Group II intron2e-1892.4
NC_008782:2062962:207199820719982072834837Acidovorax sp. JS42, complete genome4e-1787.8
NC_013223:724394:7470847470847488951812Desulfohalobium retbaense DSM 5692, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)1e-1582.8
NC_012483:3000619:302117230211723022041870Acidobacterium capsulatum ATCC 51196, complete genomegroup II intron-encoded maturase, truncated1e-1582.8
NC_014623:4683671:4704603470460347064411839Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeRNA-directed DNA polymerase2e-1582
NC_008639:2968000:3012714301271430141951482Chlorobium phaeobacteroides DSM 266, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)3e-1581.6
NC_004463:2059500:2069705206970520711801476Bradyrhizobium japonicum USDA 110, complete genomeprobable reverse transcriptase/maturase family protein6e-1580.5
NC_015942:2316354:234129423412942342007714Acidithiobacillus ferrivorans SS3 chromosome, complete genome1e-1479.7
NC_011059:65414:8611386113875941482Prosthecochloris aestuarii DSM 271, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)3e-1478.6
NC_013440:1436784:1447901144790114492501350Haliangium ochraceum DSM 14365, complete genomeRNA-directed DNA polymerase5e-1477.8
NC_007644:2318855:2325439232543923266741236Moorella thermoacetica ATCC 39073, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)1e-1376.3
NC_009921:1645380:1652195165219516536581464Frankia sp. EAN1pec, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)3e-1375.1
NC_009921:3384116:3394030339403033954931464Frankia sp. EAN1pec, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)3e-1375.1
NC_009921:3551036:3620896362089636223591464Frankia sp. EAN1pec, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)3e-1375.1
NC_017249:8221992:8267715826771582690971383Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein4e-1374.7
NC_018866:1706000:1712113171211317134741362Dehalobacter sp. DCA chromosome, complete genomeRetron-type reverse transcriptase8e-1373.6
NC_008346:331820:3628403628403641711332Syntrophomonas wolfei subsp. wolfei str. Goettingen, completeRNA-directed DNA polymerase (reverse transcriptase)1e-1272.8
NC_021182:434351:4343514343514356461296Clostridium pasteurianum BC1, complete genomeRetron-type reverse transcriptase4e-1271.2
NC_021150:2451500:2471475247147524732501776Azotobacter vinelandii CA6, complete genomeRNA-directed DNA polymerase1e-1169.3
NC_012560:2451500:2471463247146324732381776Azotobacter vinelandii DJ, complete genomeRNA-directed DNA polymerase1e-1169.3
NC_012416:573202:6026966026966040091314Wolbachia sp. wRi, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)8e-1167
NC_012416:1079661:1109155110915511104681314Wolbachia sp. wRi, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)8e-1167
NC_002947:4994335:5039380503938050405011122Pseudomonas putida KT2440, complete genomegroup II intron-encoding maturase, putative1e-1066.6
NC_010162:9207000:923247692324769233168693Sorangium cellulosum 'So ce 56', complete genomereverse transcriptase1e-1066.2
NC_015565:1511426:152349715234971524000504Desulfotomaculum carboxydivorans CO-1-SRB chromosome, complete8e-1063.5
NC_008789:835909:848128848128848793666Halorhodospira halophila SL1, complete genomeRNA-directed DNA polymerase (reverse transcriptase)1e-0962.8
NC_019902:1061432:1072862107286210741301269Thioalkalivibrio nitratireducens DSM 14787, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)4e-0961.2
NC_019897:2645404:2653914265391426552121299Thermobacillus composti KWC4 chromosome, complete genomeRetron-type reverse transcriptase5e-0960.8
NC_019897:4014485:4033591403359140348891299Thermobacillus composti KWC4 chromosome, complete genomeRetron-type reverse transcriptase5e-0960.8
NC_019940:1837863:184380118438011844352552Thioflavicoccus mobilis 8321 chromosome, complete genomehypothetical protein1e-0859.7
NC_010003:1360472:1386857138685713881761320Petrotoga mobilis SJ95, complete genome4e-0857.8
NC_010320:1268355:1287128128712812884111284Thermoanaerobacter sp. X514 chromosome, complete genomeRNA-directed DNA polymerase1e-0756.6
NC_010981:314745:3562833562833575841302Wolbachia pipientis, complete genomereverse transcriptase9e-0753.5
NC_014973:595153:6085916085916099101320Geobacter sp. M18 chromosome, complete genomeRNA-directed DNA polymerase1e-0652.8