Pre_GI: BLASTP Hits

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Query: NC_004851:191709:198117 Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence

Start: 198117, End: 198515, Length: 399

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017319:192482:198045198045198443399Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceplasmid maintenance protein3e-74276
NC_016832:3020000:302593530259353026333399Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,PilT protein domain protein1e-58224
NC_004631:3030580:303729530372953037693399Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein1e-58224
NC_003198:3042000:305138830513883051786399Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein (assiciated with virulence)1e-58224
NC_015740:2407500:242307824230782423482405Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein7e-54208
NC_012912:4167429:417212441721244172528405Dickeya zeae Ech1591, complete genomePilT protein domain protein1e-49194
NC_015581:1043394:105384510538451054243399Thioalkalimicrobium cyclicum ALM1 chromosome, complete genomePilT protein domain-containing protein5e-47186
NC_010278:1918000:192941819294181929816399Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,nucleic acid-binding protein2e-43173
NC_010995:4297361:431397843139784314382405Cellvibrio japonicus Ueda107, complete genomePIN (PilT N terminus) domain1e-42171
NC_009053:1942973:196811919681191968505387Actinobacillus pleuropneumoniae L20, complete genomehypothetical protein4e-42169
NC_010939:1986263:199298919929891993387399Actinobacillus pleuropneumoniae serovar 7 str. AP76, completehypothetical protein2e-41167
NC_012660:5242392:525619252561925256599408Pseudomonas fluorescens SBW25 chromosome, complete genomehypothetical protein1e-39161
NC_002939:2697767:271099627109962711397402Geobacter sulfurreducens PCA, complete genomevirulence associated protein C8e-29125
NC_013205:644914:649702649702650109408Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,PilT protein domain protein2e-27120
NC_013862:27991:626862686675408Allochromatium vinosum DSM 180 plasmid pALVIN02, complete sequencePilT protein domain protein4e-25113
NC_015578:61820:691206912069557438Treponema primitia ZAS-2 chromosome, complete genomeputative virulence-associated protein3e-25113
NC_015578:3980496:401721640172164017653438Treponema primitia ZAS-2 chromosome, complete genomevirulence associated protein C1e-24111
NC_010602:2244729:232456623245662324964399Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'PilT protein1e-24111
NC_010842:2310756:232995223299522330350399Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' chromosomeVapC-like nucleic acid-binding protein1e-24111
NC_016860:3995445:401015640101564010572417Salmonella enterica subsp. enterica serovar Typhimurium strVagD1e-22104
NC_013285:1:177271772718143417Cronobacter turicensis plasmid pCTU3, complete sequencehypothetical protein1e-2098.6
NC_021150:3667176:368595836859583686368411Azotobacter vinelandii CA6, complete genomePilT domain-containing protein3e-2097.1
NC_012560:3667177:368595936859593686369411Azotobacter vinelandii DJ, complete genomePilT domain-containing protein3e-2097.1
NC_015942:2213710:222199022219902222394405Acidithiobacillus ferrivorans SS3 chromosome, complete genomePilT protein domain-containing protein8e-2095.9
NC_012731:3411161:343273634327363433152417Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative DNA binding protein1e-1994.7
NC_007507:101887:111429111429111830402Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183,hypothetical protein5e-1993.2
NC_018000:2964500:296931229693122969749438Sinorhizobium fredii USDA 257 chromosome, complete genomeNtrR2 PIN domain-containing protein7e-1992.4
NC_012751:409333:428549428549428965417Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeaddiction module, PIN domain protein2e-1890.9
NC_011662:1160887:116418911641891164608420Thauera sp. MZ1T, complete genomePilT protein domain protein2e-1890.9
NC_005125:4557889:457538145753814575791411Gloeobacter violaceus PCC 7421, complete genomevirulence-associated protein VapC homolog1e-1788.6
NC_014722:1191380:120180312018031202216414Burkholderia rhizoxinica HKI 454, complete genomeVIRULENCE-ASSOCIATED PROTEIN C3e-1787
NC_011901:1398376:141724714172471417669423Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completePilT protein domain-containing protein7e-1785.9
NC_006513:881120:901787901787902134348Azoarcus sp. EbN1, complete genomeconserved hypothetical protein, similar to virulence-associated protein VapC8e-1785.9
NC_013161:4093322:410215241021524102553402Cyanothece sp. PCC 8802, complete genomePilT protein domain protein9e-1785.5
NC_014228:4408500:442340844234084423797390Xenorhabdus nematophila ATCC 19061, complete genomeconserved hypothetical protein (with PilT protein domain)3e-1684
NC_013889:1623697:163398116339811634379399Thioalkalivibrio sp. K90mix chromosome, complete genomePilT protein domain protein3e-1683.6
NC_009615:4425500:445163544516354452045411Parabacteroides distasonis ATCC 8503 chromosome, complete genomeDNA binding protein6e-1682.8
NC_017098:32196:503285032850723396Spirochaeta africana DSM 8902 chromosome, complete genomeputative nucleic acid-binding protein, contains PIN domain1e-1581.6
NC_015942:1711026:171449517144951714905411Acidithiobacillus ferrivorans SS3 chromosome, complete genomePilT protein domain-containing protein2e-1581.3
NC_010831:40000:577155771558161447Chlorobium phaeobacteroides BS1, complete genomePilT protein domain protein7e-1579.3
NC_019902:1:138671386714271405Thioalkalivibrio nitratireducens DSM 14787, complete genomeVapC toxin protein2e-1477.4
NC_015382:266000:274647274647275057411Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequencePIN domain protein4e-1476.6
NC_009511:2921448:294077129407712941145375Sphingomonas wittichii RW1 chromosome, complete genomePilT domain-containing protein2e-1374.3
NC_011761:2344408:235943323594332359819387Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completePIN domain-containing protein4e-1270.1
NC_012752:1:789078908285396Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) plasmidputative addiction module, PIN domain protein5e-1269.7
NC_015510:2487617:249169624916962492112417Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomePilT protein domain-containing protein7e-1269.3
NC_008463:2467219:247897524789752479136162Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein2e-1168.2
NC_012751:942315:953691953691954098408Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeaddiction module,PIN domain protein3e-1167.4
NC_017080:1981788:200000020000002000299300Phycisphaera mikurensis NBRC 102666, complete genomehypothetical protein7e-1165.9
NC_011206:2239109:225417922541792254520342Acidithiobacillus ferrooxidans ATCC 53993, complete genomePilT protein domain protein9e-1165.5
NC_009439:1174432:118093511809351181354420Pseudomonas mendocina ymp, complete genomePilT domain-containing protein7e-1062.8
NC_019902:1061432:109048510904851090715231Thioalkalivibrio nitratireducens DSM 14787, complete genome7e-0959.3
NC_008789:835909:877016877016877303288Halorhodospira halophila SL1, complete genomePilT protein-like protein1e-0858.5
NC_013730:4811911:482453148245314824944414Spirosoma linguale DSM 74, complete genomePilT protein domain protein2e-0857.8
NC_017059:1727095:173726917372691737694426Rhodospirillum photometricum DSM 122, complete genomePutative plasmid stability-like protein8e-0855.8
NC_017276:774690:780110780110780502393Sulfolobus islandicus REY15A chromosome, complete genomeVapC-type toxin3e-0753.9
NC_010513:2452811:245281124528112453239429Xylella fastidiosa M12 chromosome, complete genomeplasmid stabilization protein4e-0753.5
NC_017080:1981788:199977119997711999959189Phycisphaera mikurensis NBRC 102666, complete genomehypothetical protein9e-0752.4
NC_015510:4982255:500616850061685006557390Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomePilT protein domain-containing protein2e-0651.2