Pre_GI: BLASTP Hits

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Query: NC_004851:157675:177513 Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence

Start: 177513, End: 177797, Length: 285

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009837:92000:923469234692630285Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequencehypothetical protein7e-46182
NC_016860:4024000:403777140377714038055285Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-45181
NC_009787:17344:256302563025908279Escherichia coli E24377A plasmid pETEC_35, complete sequenceCopG family protein3e-45179
NC_010694:436500:437031437031437303273Erwinia tasmaniensis, complete genomehypothetical protein1e-29127
NC_019940:2098902:210856321085632108832270Thioflavicoccus mobilis 8321 chromosome, complete genometranscriptional regulator8e-29125
NC_010678:642769:644928644928645191264Ralstonia pickettii 12J chromosome 2, complete sequencetranscriptional regulator, CopG family2e-28124
NC_009439:2427120:244171524417152441987273Pseudomonas mendocina ymp, complete genomeCopG family transcriptional regulator1e-25115
NC_020829:1:361523615236424273Pseudomonas denitrificans ATCC 13867, complete genomeCopG family transcriptional regulator1e-1375.1
NC_013961:441719:468423468423468671249Erwinia amylovora, complete genomeUncharacterized protein y4kO3e-0960.5
NC_009436:522649:544357544357544605249Enterobacter sp. 638, complete genomeCopG family transcriptional regulator3e-0960.5
NC_013971:3296272:330262933026293302877249Erwinia amylovora ATCC 49946 chromosome, complete genomeplasmid-like protein3e-0960.5
NC_004547:442927:466558466558466815258Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative plasmid-related protein4e-0960.1
NC_010102:4745949:474890647489064749154249Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein4e-0856.6
NC_020063:528296:547722547722547970249Enterobacteriaceae bacterium strain FGI 57, complete genomeputative transcriptional regulator5e-0856.6
NC_016831:4517850:452442445244244524672249Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein6e-0856.2
NC_011294:4560902:456727645672764567524249Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein6e-0856.2
NC_011205:4718239:472461347246134724861249Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853AraC family transcriptional regulator7e-0856.2
NC_011274:4538722:454509645450964545344249Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein9e-0855.8