Pre_GI: BLASTN Hits

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Query: NC_004741:3240909 Shigella flexneri 2a str. 2457T, complete genome

Start: 3240909, End: 3262366, Length: 21458

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_004337:32497913249791327283723047Shigella flexneri 2a str. 301, complete genome042250BLASTN svgBLASTP svg
NC_010473:3354052*3354052337759923548Escherichia coli str. K-12 substr. DH10B, complete genome034550BLASTN svgBLASTP svg
NC_000913:3256307*3256307327821621910Escherichia coli K12, complete genome034550BLASTN svgBLASTP svg
CP002185:3475991*3475991350005224062Escherichia coli W, complete genome034190BLASTN svgBLASTP svg
NC_008258:32247213224721324719422474Shigella flexneri 5 str. 8401, complete genome032300BLASTN svgBLASTP svg
NC_009801:35950013595001361359918599Escherichia coli E24377A, complete genome030760BLASTN svgBLASTP svg
CP002516:613462*61346263169018229Escherichia coli KO11, complete genome030620BLASTN svgBLASTP svg
AC_000091:3258377*3258377328148023104Escherichia coli W3110 DNA, complete genome026520BLASTN svgBLASTP svg
CU928160:3344746*3344746336309918354Escherichia coli IAI1 chromosome, complete genome021790BLASTN svgBLASTP svg
NC_010468:61381261381263388120070Escherichia coli ATCC 8739, complete genome021710BLASTN svgBLASTP svg
NC_009800:3307123*3307123332547318351Escherichia coli HS, complete genome021480BLASTN svgBLASTP svg
NC_011748:3608917*3608917363276823852Escherichia coli 55989, complete genome020990BLASTN svgBLASTP svg
CU928145:3608917*3608917363276823852Escherichia coli 55989 chromosome, complete genome020990BLASTN svgBLASTP svg
NC_002695:3994970*3994970401809923130Escherichia coli O157:H7 str. Sakai, complete genome020720BLASTN svgBLASTP svg
NC_011750:3768692*3768692379303824347Escherichia coli IAI39 chromosome, complete genome020630BLASTN svgBLASTP svg
NC_011751:37107863710786373513424349Escherichia coli UMN026 chromosome, complete genome020010BLASTN svgBLASTP svg
NC_010498:34885133488513350850119989Escherichia coli SMS-3-5, complete genome019940BLASTN svgBLASTP svg
NC_010658:3014371*3014371303259918229Shigella boydii CDC 3083-94, complete genome018730BLASTN svgBLASTP svg
NC_007613:29818292981829300438522557Shigella boydii Sb227, complete genome015910BLASTN svgBLASTP svg
NC_007946:10731351073135109859925465Escherichia coli UTI89, complete genome01558BLASTN svgBLASTP svg
NC_004431:11197001119700115120831509Escherichia coli CFT073, complete genome01550BLASTN svgBLASTP svg
NC_015061:42860004286000431231226313Rahnella sp. Y9602 chromosome, complete genome2e-136494BLASTN svgBLASTP svg
NC_005810:43067164306716433058723872Yersinia pestis biovar Microtus str. 91001, complete genome8e-136492BLASTN svgBLASTP svg
NC_007712:16014991601499163292631428Sodalis glossinidius str. 'morsitans', complete genome3e-126460BLASTN svgBLASTP svg
NC_009801:995396995396101946824073Escherichia coli E24377A, complete genome2e-115424BLASTN svgBLASTP svg
NC_018419:86250086250088609923600Secondary endosymbiont of Ctenarytaina eucalypti chromosome,2e-77297BLASTN svgBLASTP svg
NC_008228:81600081600083918923190Pseudoalteromonas atlantica T6c, complete genome4e-42180BLASTN svgBLASTP svg
NC_013508:2356865*2356865238859931735Edwardsiella tarda EIB202, complete genome6e-41176BLASTN svgBLASTP svg
NC_010473:37225713722571375929536725Escherichia coli str. K-12 substr. DH10B, complete genome2e-37165BLASTN svgBLASTP svg
NC_007384:38970003897000391653419535Shigella sonnei Ss046, complete genome2e-37165BLASTN svgBLASTP svg
NC_000913:3624826*3624826366560340778Escherichia coli K12, complete genome2e-37165BLASTN svgBLASTP svg
AC_000091:39952333995233402122325991Escherichia coli W3110 DNA, complete genome2e-37165BLASTN svgBLASTP svg
NC_007613:34703143470314350909338780Shigella boydii Sb227, complete genome1e-32149BLASTN svgBLASTP svg
NC_020064:1611820*1611820163518523366Serratia marcescens FGI94, complete genome2e-31145BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome2e-25125BLASTN svgBLASTP svg
NC_002695:20565452056545207693920395Escherichia coli O157:H7 str. Sakai, complete genome1e-23119BLASTN svgBLASTP svg
NC_013960:48961648961651178322168Nitrosococcus halophilus Nc4 chromosome, complete genome2e-22115BLASTN svgBLASTP svg
NC_012779:2424967*2424967244959924633Edwardsiella ictaluri 93-146, complete genome3e-21111BLASTN svgBLASTP svg
NC_012560:1260031*1260031129243132401Azotobacter vinelandii DJ, complete genome3e-21111BLASTN svgBLASTP svg
AP010958:86786986786989060722739Escherichia coli O103:H2 str. 12009 DNA, complete genome1e-20109BLASTN svgBLASTP svg
NC_010468:40594364059436408235622921Escherichia coli ATCC 8739, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_002695:91750991750994039822890Escherichia coli O157:H7 str. Sakai, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_011751:39842363984236400841624181Escherichia coli UMN026 chromosome, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_008258:1934479*1934479196306928591Shigella flexneri 5 str. 8401, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_007645:6013242*6013242603721023969Hahella chejuensis KCTC 2396, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_009654:2958316*2958316298838530070Marinomonas sp. MWYL1, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_004347:30280003028000305021722218Shewanella oneidensis MR-1, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_006155:35961203596120363277836659Yersinia pseudotuberculosis IP 32953, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_007384:1320287*1320287134781127525Shigella sonnei Ss046, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_012779:95755895755898306025503Edwardsiella ictaluri 93-146, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_013209:2032500*2032500205574623247Acetobacter pasteurianus IFO 3283-01, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_004337:17836451783645180635922715Shigella flexneri 2a str. 301, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_007384:10860251086025111635930335Shigella sonnei Ss046, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_007384:17378851737885176063922755Shigella sonnei Ss046, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_009831:20458112045811206913323323Shewanella sediminis HAW-EB3, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_010473:4564590*4564590458823123642Escherichia coli str. K-12 substr. DH10B, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_000913:4462782*4462782448642323642Escherichia coli K12, complete genome4e-1177.8BLASTN svgBLASTP svg
AC_000091:4472000*4472000449474322744Escherichia coli W3110 DNA, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_010498:4821519*4821519484497023452Escherichia coli SMS-3-5, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010634:35098803509880354653836659Yersinia pseudotuberculosis PB1/+, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_021182:2219286*2219286224215022865Clostridium pasteurianum BC1, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_012483:23383922338392236269824307Acidobacterium capsulatum ATCC 51196, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007613:4217557*4217557425611838562Shigella boydii Sb227, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_010658:4494103*4494103451209917997Shigella boydii CDC 3083-94, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014844:659829*65982970618546357Desulfovibrio aespoeensis Aspo-2 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015711:8852850*8852850887609923250Myxococcus fulvus HW-1 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_008536:5192235*5192235521520622972Solibacter usitatus Ellin6076, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_007606:37551553755155377834323189Shigella dysenteriae Sd197, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013093:2633000*2633000269098057981Actinosynnema mirum DSM 43827, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_020063:3690308*3690308375363663329Enterobacteriaceae bacterium strain FGI 57, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_020063:41704644170464419392123458Enterobacteriaceae bacterium strain FGI 57, complete genome3e-0661.9BLASTN svgBLASTP svg
CP002516:119935*11993514694827014Escherichia coli KO11, complete genome1e-0560BLASTN svgBLASTP svg
CU928145:41319244131924415503823115Escherichia coli 55989 chromosome, complete genome1e-0560BLASTN svgBLASTP svg
NC_003911:3864852*3864852389829633445Silicibacter pomeroyi DSS-3, complete genome1e-0560BLASTN svgBLASTP svg
NC_007946:25874725874728282624080Escherichia coli UTI89, complete genome1e-0560BLASTN svgBLASTP svg
NC_007946:3855445*3855445387497119527Escherichia coli UTI89, complete genome1e-0560BLASTN svgBLASTP svg
NC_008253:25705925705928215125093Escherichia coli 536, complete genome1e-0560BLASTN svgBLASTP svg
NC_008563:258725*25872528280524081Escherichia coli APEC O1, complete genome1e-0560BLASTN svgBLASTP svg
NC_008563:3888232*3888232390776619535Escherichia coli APEC O1, complete genome1e-0560BLASTN svgBLASTP svg
NC_009800:3787320*3787320380985222533Escherichia coli HS, complete genome1e-0560BLASTN svgBLASTP svg
NC_010468:111504*11150413814926646Escherichia coli ATCC 8739, complete genome1e-0560BLASTN svgBLASTP svg
NC_011748:41319244131924415503823115Escherichia coli 55989, complete genome1e-0560BLASTN svgBLASTP svg
CP002185:39645003964500398613821639Escherichia coli W, complete genome1e-0560BLASTN svgBLASTP svg