Pre_GI: BLASTP Hits

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Query: NC_004741:366822:386970 Shigella flexneri 2a str. 2457T, complete genome

Start: 386970, End: 388445, Length: 1476

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:385552:4050334050334065081476Shigella flexneri 2002017 chromosome, complete genomeBeta-lactamase induction signal transducer AmpG0843
NC_004337:367687:3871693871693886441476Shigella flexneri 2a str. 301, complete genomebeta-lactamase induction signal transducer AmpG0843
NC_008258:401786:4248204248204262951476Shigella flexneri 5 str. 8401, complete genomeregulates beta-lactamase synthesis0843
NC_020181:2714559:2714559271455927160341476Enterobacter aerogenes EA1509E, complete genomeAmpG permease0760
NC_015663:2694373:2729743272974327312181476Enterobacter aerogenes KCTC 2190 chromosome, complete genomemuropeptide transporter0760
NC_014311:3348102:3350107335010733513871281Ralstonia solanacearum PSI07 chromosome, complete genomemuropeptide transport protein (MFS family)6e-144511
NC_014307:3240430:3255731325573132570111281Ralstonia solanacearum CFBP2957 chromosome, complete genomemuropeptide transport protein (mfs family)2e-143509
NC_017223:51180:5118051180523911212Bordetella pertussis CS chromosome, complete genomemuropeptide transporter4e-120432
NC_008245:66852:7096070960722251266Francisella tularensis subsp. tularensis FSC 198, complete genomemajor facilitator superfamily (MFS) tranport protein1e-72274
NC_006570:24636:7094470944722091266Francisella tularensis subsp. tularensis Schu 4, complete genomemajor facilitator superfamily (MFS) tranport protein1e-72274
NC_016933:66854:7096270962722271266Francisella tularensis TIGB03 chromosome, complete genomeAmpG permease1e-72274
NC_016937:66854:7096270962722271266Francisella tularensis subsp. tularensis TI0902 chromosome,AmpG permease1e-72274
NC_009257:151737:1558451558451571101266Francisella tularensis subsp. tularensis WY96-3418 chromosome,major facilitator superfamily transporter3e-72273
NC_010677:96470:1427931427931440581266Francisella tularensis subsp. mediasiatica FSC147, complete genomepeptide-acetyl-coenzyme A transporter (PAT) family protein3e-72273
NC_007880:1703346:1722622172262217238871266Francisella tularensis subsp. holarctica, complete genomemajor facilitator superfamily (MFS) tranport protein8e-72271
NC_009749:1699152:1718521171852117197861266Francisella tularensis subsp. holarctica FTA, complete genomemajor facilitator superfamily8e-72271
NC_008369:1702885:1722254172225417235191266Francisella tularensis subsp. holarctica OSU18, complete genomeMFS family major facilitator transporter8e-72271
NC_008601:1733940:1753261175326117545261266Francisella tularensis subsp. novicida U112, complete genomepeptide-acetyl-coenzyme A transporter (PAT) family protein6e-72271
NC_010336:996661:1042990104299010443631374Francisella philomiragia subsp. philomiragia ATCC 25017, completepeptide-acetyl-coenzyme A transporter (PAT) family protein1e-68260
NC_015696:517941:5644385644385658111374Francisella sp. TX077308 chromosome, complete genomeAmpG permease3e-68259
NC_015572:293665:3034883034883048431356Methylomonas methanica MC09 chromosome, complete genomemajor facilitator superfamily protein7e-65248
NC_005085:786851:8084848084848097611278Chromobacterium violaceum ATCC 12472, complete genomeMFS family, muropeptide transporter9e-65248
NC_017516:364404:3671353671353683701236Neisseria meningitidis H44/76 chromosome, complete genomepermease, AmpG family3e-61236
NC_003112:364869:3675523675523688351284Neisseria meningitidis MC58, complete genomeAmpG-related protein3e-61236
NC_015460:418826:4363514363514376221272Gallibacterium anatis UMN179 chromosome, complete genomemuropeptide transporter3e-60233
NC_017513:1845069:1857570185757018587301161Neisseria meningitidis G2136 chromosome, complete genomepermease, AmpG family5e-57222
NC_017515:372487:3740563740563753391284Neisseria meningitidis M04-240196 chromosome, complete genomepermease, AmpG family5e-57222
NC_011035:1564821:1579916157991615812681353Neisseria gonorrhoeae NCCP11945 chromosome, complete genomeAmpG protein4e-57222
NC_017511:1467090:1482752148275214841041353Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomeAmpG protein4e-57222
NC_017514:1885154:1898887189888719001701284Neisseria meningitidis M01-240149 chromosome, complete genomepermease, AmpG family4e-57222
NC_017518:2041282:2053116205311620543991284Neisseria meningitidis NZ-05/33 chromosome, complete genomepermease, AmpG family4e-57222
NC_002946:1556000:1570641157064115719241284Neisseria gonorrhoeae FA 1090, complete genomeAmpG7e-57221
NC_010120:1814592:1829845182984518311281284Neisseria meningitidis 053442, complete genomeMFS transporter, PAT family, beta-lactamase induction signal transducer AmpG7e-57221
NC_013016:1801000:1816298181629818175811284Neisseria meningitidis alpha14 chromosome, complete genomeAmpG-related permease1e-56221
NC_003116:2063500:2075985207598520772681284Neisseria meningitidis Z2491, complete genomeintegral membrane signal transducer protein2e-56220
NC_017512:1824966:1840151184015118414341284Neisseria meningitidis WUE 2594, complete genomeputative AmpG-like permease2e-56220
NC_008767:1829500:1845076184507618463591284Neisseria meningitidis FAM18, complete genomeputative integral membrane signal transducer protein3e-56219
NC_007798:703922:7236327236327249061275Neorickettsia sennetsu str. Miyayama, complete genomeputative permease1e-45184
NC_009883:871594:8920008920008932321233Rickettsia bellii OSU 85-389, complete genomeAmpG1e-44181
NC_016745:1257397:1280296128029612815971302Oceanimonas sp. GK1 chromosome, complete genomemuropeptide permease AmpG2e-44181
NC_010717:4851000:4868298486829848695931296Xanthomonas oryzae pv. oryzae PXO99A, complete genomesignal transducer9e-44178
NC_004459:1794540:1811349181134918126741326Vibrio vulnificus CMCP6 chromosome I, complete sequenceAmpG protein2e-43176
NC_003919:4568892:4586960458696045881801221Xanthomonas axonopodis pv. citri str. 306, complete genomesignal transducer2e-42174
NC_007508:4593446:4611468461146846127631296Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomepeptide-acetyl-coenzyme A transporter family protein6e-41169
NC_014532:1481787:1486987148698714883481362Halomonas elongata DSM 2581, complete genomemajor facilitator superfamily transporter3e-37156
NC_010511:4450312:4474743447474344760771335Methylobacterium sp. 4-46 chromosome, complete genomemajor facilitator superfamily transporter2e-36154
NC_010577:151926:1646981646981662271530Xylella fastidiosa M23, complete genomemajor facilitator superfamily MFS_11e-36154
NC_004556:151593:1647661647661662951530Xylella fastidiosa Temecula1, complete genomebeta-lactamase induction signal transducer protein1e-36154
NC_000963:803435:8274808274808287061227Rickettsia prowazekii str. Madrid E, complete genomeAMPG PROTEIN (ampG2)4e-34146
NC_004578:4940000:4943788494378849453381551Pseudomonas syringae pv. tomato str. DC3000, complete genomeampG protein, putative7e-34145
NC_007005:4857768:4860930486093048624801551Pseudomonas syringae pv. syringae B728a, complete genomeAmpG-related permease4e-33142
NC_006142:811469:8359158359158371411227Rickettsia typhi str. Wilmington, complete genomemurein peptide permease protein AmpG6e-33142
NC_016911:926918:9523839523839536841302Rickettsia rickettsii str. Hauke chromosome, complete genomeAmpG protein5e-32139
NC_015942:1711026:1734340173434017355721233Acidithiobacillus ferrivorans SS3 chromosome, complete genomemajor facilitator superfamily protein5e-25115
NC_017065:930985:9533929533929544561065Rickettsia slovaca str. D-CWPP chromosome, complete genomeAmpG protein5e-24112
NC_016909:926000:9520209520209530841065Rickettsia rickettsii str. Arizona chromosome, complete genomeAmpG protein7e-24112
NC_009882:915500:9408019408019418651065Rickettsia rickettsii str. 'Sheila Smith', complete genomeampG protein7e-24112
NC_015866:933500:9601359601359611991065Rickettsia heilongjiangensis 054 chromosome, complete genomeAmpG1e-23111
NC_009439:4913767:4928694492869449299441251Pseudomonas mendocina ymp, complete genomemajor facilitator transporter6e-23109
NC_017043:376441:4015014015014025651065Rickettsia montanensis str. OSU 85-930 chromosome, complete genomeAmpG protein5e-23109
NC_017057:804799:827774827774828742969Rickettsia prowazekii str. RpGvF24 chromosome, complete genomemuropeptide permease AmpG1e-22108
NC_017056:804416:827391827391828359969Rickettsia prowazekii str. BuV67-CWPP chromosome, complete genomemuropeptide permease AmpG1e-22108
NC_017050:804417:827392827392828360969Rickettsia prowazekii str. Katsinyian chromosome, complete genomemuropeptide permease AmpG1e-22108
NC_017049:801469:825514825514826482969Rickettsia prowazekii str. Chernikova chromosome, complete genomemuropeptide permease AmpG1e-22108
NC_017048:33578:576235762358591969Rickettsia prowazekii str. GvV257 chromosome, complete genomemuropeptide permease AmpG1e-22108
NC_017051:801488:825534825534826358825Rickettsia prowazekii str. Dachau chromosome, complete genomemuropeptide permease AmpG7e-2099
NC_007912:1111093:1137764113776411393501587Saccharophagus degradans 2-40, complete genomehypothetical protein8e-2098.6
NC_017066:811565:836011836011836835825Rickettsia typhi str. TH1527 chromosome, complete genomemurein peptide permease protein AmpG2e-1894.4
NC_017062:812133:836579836579837424846Rickettsia typhi str. B9991CWPP chromosome, complete genomemurein peptide permease protein AmpG2e-1894.4
NC_011883:1601552:1606838160683816080581221Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,major facilitator superfamily MFS_12e-1790.9
NC_018868:3943088:3967474396747439689821509Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomemajor facilitator superfamily permease4e-1789.7
NC_009881:896007:922940922940923773834Rickettsia akari str. Hartford, complete genomeampG protein6e-1685.9
NC_016010:1822212:1874783187478318760601278Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeMFS transporter permease1e-1584.7
NC_012962:2587756:2611946261194626131931248Photorhabdus asymbiotica, complete genomeputative cytoplasmic transmembrane protein3e-1583.6
NC_008686:1439328:1460233146023314614201188Paracoccus denitrificans PD1222 chromosome 1, complete sequencemajor facilitator superfamily MFS_13e-1583.6
NC_007086:2887875:2912173291217329134501278Xanthomonas campestris pv. campestris str. 8004, complete genomeputative transport transmembrane protein1e-1481.3
NC_015556:130437:1524651524651537151251Pseudomonas fulva 12-X chromosome, complete genomemajor facilitator superfamily MFS_12e-1273.9
NC_015311:2235550:2239756223975622410811326Prevotella denticola F0289 chromosome, complete genomemajor facilitator family transporter3e-1273.6
NC_008686:1439328:1462601146260114638271227Paracoccus denitrificans PD1222 chromosome 1, complete sequencemajor facilitator superfamily MFS_17e-1168.9
NC_014933:510164:5237745237745251291356Bacteroides helcogenes P 36-108 chromosome, complete genometransmembrane permease5e-1066.2
NC_015164:890955:9041169041169053781263Bacteroides salanitronis DSM 18170 chromosome, complete genomebeta-lactamase induction signal transducer1e-0965.1
NC_005966:2699483:2702041270204127032641224Acinetobacter sp. ADP1, complete genomeputative transport protein (MFS superfamily)2e-0861.2
NC_012881:478042:4951294951294963941266Desulfovibrio salexigens DSM 2638, complete genomemajor facilitator superfamily MFS_12e-0861.2
NC_009614:868452:8789578789578802551299Bacteroides vulgatus ATCC 8482 chromosome, complete genomesignal transducer9e-0858.9
CU928145:2237099:2235826223582622372291404Escherichia coli 55989 chromosome, complete genomeputative permease of yersiniabactin-iron transporter YbtX3e-0757
NC_011748:2237099:2235826223582622372291404Escherichia coli 55989, complete genomeyersiniabactin-iron transporter permease YbtX3e-0757
NC_010634:1916000:1945521194552119468011281Yersinia pseudotuberculosis PB1/+, complete genomemajor facilitator transporter1e-0655.1
NC_008563:2094855:2093582209358220949701389Escherichia coli APEC O1, complete genomehypothetical protein2e-0654.3
NC_008253:1938975:1974106197410619754941389Escherichia coli 536, complete genomeputative cytoplasmic transmembrane protein2e-0654.3
NC_007946:2074098:2072825207282520742281404Escherichia coli UTI89, complete genomehypothetical protein2e-0654.3
NC_011742:2002526:2001253200125320026561404Escherichia coli S88 chromosome, complete genomeyersiniabactin-iron transporter permease YbtX2e-0654.3
NC_006155:1916426:1945537194553719468171281Yersinia pseudotuberculosis IP 32953, complete genomeputative signal transducer or MFS Superfamily transporter2e-0653.9
NC_010159:2164500:2193768219376821950481281Yersinia pestis Angola, complete genomeyersinabactin region putative transporter YbtX2e-0653.9
NC_003143:2137945:2167057216705721683371281Yersinia pestis CO92, complete genomeputative signal transducer2e-0653.9
NC_017154:2137500:2166625216662521679051281Yersinia pestis D106004 chromosome, complete genomeputative signal transducer2e-0653.9
NC_017160:2362002:2369996236999623712761281Yersinia pestis D182038 chromosome, complete genomeputative signal transducer2e-0653.9
NC_008150:1420825:1450028145002814514161389Yersinia pestis Antiqua, complete genomeputative signal transducer2e-0653.9
NC_009381:1362471:1367862136786213692501389Yersinia pestis Pestoides F chromosome, complete genomesignal transducer2e-0653.9
NC_004431:2185750:2220947222094722223501404Escherichia coli CFT073, complete genomePutative cytoplasmic transmembrane protein2e-0653.9
NC_011750:1134721:1158786115878611600661281Escherichia coli IAI39 chromosome, complete genomeyersiniabactin-iron transporter permease YbtX2e-0653.9
NC_004088:2640440:2648461264846126498641404Yersinia pestis KIM, complete genomehypothetical protein2e-0653.9
NC_011751:2281653:2280380228038022817831404Escherichia coli UMN026 chromosome, complete genomeyersiniabactin-iron transporter permease YbtX2e-0653.9
NC_005810:1794490:1823678182367818250811404Yersinia pestis biovar Microtus str. 91001, complete genomeputative signal transducer2e-0653.9
CP002797:2025330:2024057202405720253371281Escherichia coli NA114, complete genomePutative cytoplasmic transmembrane protein5e-0653.1