Pre_GI: BLASTP Hits

Some Help

Query: NC_004741:366822:370056 Shigella flexneri 2a str. 2457T, complete genome

Start: 370056, End: 371504, Length: 1449

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:385552:3887863887863902341449Shigella flexneri 2002017 chromosome, complete genomeThiamine biosynthesis protein thiI0956
NC_008258:401786:4050204050204064681449Shigella flexneri 5 str. 8401, complete genomeputative oxidoreductase0956
NC_015663:2694373:2697631269763126990791449Enterobacter aerogenes KCTC 2190 chromosome, complete genometRNA s(4)U8 sulfurtransferase0890
NC_020181:2714559:2746717274671727481651449Enterobacter aerogenes EA1509E, complete genomeThiamine biosynthesis protein thiI0890
NC_004337:367687:3709213709213722911371Shigella flexneri 2a str. 301, complete genomethiamine biosynthesis protein ThiI0878
NC_008570:1852286:1855925185592518573731449Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomethiamine biosynthesis/tRNA modification protein ThiI0645
NC_015424:1603000:1606909160690916083571449Aeromonas veronii B565 chromosome, complete genometRNA sulfurtransferase0640
NC_009348:2836969:2850022285002228514701449Aeromonas salmonicida subsp. salmonicida A449, complete genomethiamine biosynthesis protein ThiI0639
NC_016745:1257397:1275976127597612774241449Oceanimonas sp. GK1 chromosome, complete genometRNA s(4)U8 sulfurtransferase3e-160565
NC_017192:1841987:1877382187738218788541473Arcobacter sp. L, complete genomethiamine biosynthesis protein ThiI6e-110398
NC_014471:1153438:1185276118527611865051230Ignisphaera aggregans DSM 17230 chromosome, complete genomethiamine biosynthesis/tRNA modification protein ThiI6e-54212
NC_005877:509877:5111515111515125601410Picrophilus torridus DSM 9790, complete genomethiamine biosynthesis protein ThiI4e-47189
NC_012588:1619376:1639798163979816409191122Sulfolobus islandicus M.14.25 chromosome, complete genomethiamine biosynthesis/tRNA modification protein ThiI3e-47189
NC_012622:1679812:1697801169780116989221122Sulfolobus islandicus Y.G.57.14 chromosome, complete genomethiamine biosynthesis/tRNA modification protein ThiI7e-47188
NC_002754:285759:2857592857592868741116Sulfolobus solfataricus P2, complete genomeThiamine biosynthesis protein thiI (thiI)2e-45183
NC_009637:602079:6020796020796032301152Methanococcus maripaludis C7 chromosome, complete genomethiamine biosynthesis/tRNA modification protein ThiI3e-40166
NC_000909:858840:8609208609208620651146Methanocaldococcus jannaschii DSM 2661, complete genomehypothetical protein5e-40166
NC_009975:1203372:1227211122721112283621152Methanococcus maripaludis C6, complete genomethiamine biosynthesis/tRNA modification protein ThiI4e-39162
NC_015847:1418036:1418036141803614191871152Methanococcus maripaludis XI chromosome, complete genomethiamine biosynthesis/tRNA modification protein ThiI2e-38160
NC_015676:1736375:1741438174143817426131176Methanosalsum zhilinae DSM 4017 chromosome, complete genomethiamine biosynthesis/tRNA modification protein ThiI6e-38159
NC_014328:3120145:3139229313922931403711143Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative thiamine biosynthesis protein2e-37157
NC_018876:2305659:2305659230565923068311173Methanolobus psychrophilus R15 chromosome, complete genomethiazole biosynthesis protein2e-36154
NC_015574:1046500:1063171106317110643371167Methanobacterium sp. SWAN-1 chromosome, complete genometRNA sulfurtransferase4e-36152
NC_011772:4565418:4573622457362245748361215Bacillus cereus G9842, complete genomethiamine biosynthesis protein ThiI5e-35149
NC_011725:4600000:4608367460836746095811215Bacillus cereus B4264 chromosome, complete genomethiamine biosynthesis protein ThiI1e-34147
NC_009635:800000:8235948235948248141221Methanococcus aeolicus Nankai-3 chromosome, complete genomethiamine biosynthesis/tRNA modification protein ThiI3e-33143
NC_016051:766683:7842677842677854091143Thermococcus sp. AM4 chromosome, complete genomethiamine biosynthesis protein ThiI-like protein9e-33141
NC_012804:1372667:1392945139294513940871143Thermococcus gammatolerans EJ3, complete genomeThiamine biosynthesis protein (ThiI)2e-32140
NC_012883:287965:3373793373793385271149Thermococcus sibiricus MM 739, complete genomeProbable thiamine biosynthesis protein thiI2e-30134
NC_014921:777047:7918567918567929891134Mycoplasma fermentans M64 chromosome, complete genomethiamine biosynthesis protein thii2e-30133
NC_014721:1629063:1636599163659916377771179Caldicellulosiruptor kristjanssonii 177R1B chromosome, completethiamine biosynthesis/tRNA modification protein thii7e-30132
NC_013517:773280:7987087987087998741167Sebaldella termitidis ATCC 33386, complete genomethiamine biosynthesis/tRNA modification protein ThiI1e-29131
NC_014833:97931:1106801106801118581179Ruminococcus albus 7 chromosome, complete genomethiamine biosynthesis/tRNA modification protein ThiI1e-29131
NC_006396:1097000:1100002110000211011891188Haloarcula marismortui ATCC 43049 chromosome I, complete sequenceprobable thiamine biosynthesis protein ThiI3e-29130
NC_005213:295994:3718863718863731871302Nanoarchaeum equitans Kin4-M, complete genomehypothetical protein2e-28127
NC_005213:202400:3718863718863731871302Nanoarchaeum equitans Kin4-M, complete genomehypothetical protein2e-28127
NC_010376:606000:6221046221046232791176Finegoldia magna ATCC 29328, complete genomethiamine biosynthesis protein7e-28125
NC_011529:766292:7898297898297909201092Thermococcus onnurineus NA1, complete genomeHypothetical thiI8e-28125
NC_010999:1381497:1401997140199714032141218Lactobacillus casei, complete genomeThiamine biosynthesis ATP pyrophosphorylase1e-27124
NC_003551:860862:8623428623428634661125Methanopyrus kandleri AV19, complete genomeATP pyrophosphatase involved in thiamine biosynthesis5e-26119
NC_010718:2492895:2501579250157925028201242Natranaerobius thermophilus JW/NM-WN-LF, complete genomethiamine biosynthesis/tRNA modification protein ThiI6e-24112
NC_005835:1345790:1365272136527213664921221Thermus thermophilus HB27, complete genomethiamine biosynthesis protein thiI2e-23110
NC_003551:723901:7398167398167408621047Methanopyrus kandleri AV19, complete genomeThiamine biosynthesis ATP pyrophosphatase2e-1997.8
NC_012804:1372667:139488413948841395477594Thermococcus gammatolerans EJ3, complete genomeThiamin biosynthesis protein (thiI)4e-1996.3
NC_000961:1532245:155618315561831556788606Pyrococcus horikoshii OT3, complete genomethiamine biosynthesis protein ThiI6e-1892.4
NC_012883:287965:339018339018339644627Thermococcus sibiricus MM 739, complete genomeThiI thiamin biosynthesis protein thiI1e-1791.7
NC_016051:766683:786010786010786603594Thermococcus sp. AM4 chromosome, complete genomethiamine biosynthesis protein ThiI4e-1686.7