Pre_GI: BLASTP Hits

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Query: NC_004741:310382:324316 Shigella flexneri 2a str. 2457T, complete genome

Start: 324316, End: 324609, Length: 294

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009800:289000:2918312918312929911161Escherichia coli HS, complete genomesite-specific recombinase, phage integrase family1e-51201
NC_017328:303987:3104213104213115811161Shigella flexneri 2002017 chromosome, complete genomephage integrase family site-specific recombinase1e-51201
NC_008258:269806:2774612774612786211161Shigella flexneri 5 str. 8401, complete genomeputative integrase1e-51201
NC_004337:309833:317312317312317605294Shigella flexneri 2a str. 301, complete genomeintegrase4e-51199
NC_014562:469154:475073475073475705633Pantoea vagans C9-1 chromosome, complete genomeTyrosine recombinase xerD9e-34142
NC_012214:2805297:282140528214052822034630Erwinia pyrifoliae Ep1/96, complete genomephage integrase family, fragment2e-33140
NC_020418:3133831:3146831314683131479941164Morganella morganii subsp. morganii KT, complete genomeintegrase2e-33140
NC_015566:1206500:121002012100201210430411Serratia sp. AS12 chromosome, complete genome1e-32138
NC_015567:1206727:121020512102051210615411Serratia sp. AS9 chromosome, complete genome1e-32138
NC_016845:1285435:1288374128837412895371164Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,site-specific recombinase, phage integrase family5e-32136
NC_011283:4212000:4229167422916742303301164Klebsiella pneumoniae 342 chromosome, complete genomephage integrase family site-specific recombinase5e-32136
NC_014306:1286248:129230312923031293148846Erwinia billingiae Eb661, complete genomesimilar to prophage integrase3e-32136
NC_004741:310382:3260603260603272231164Shigella flexneri 2a str. 2457T, complete genomeputative phage integrase3e-32136
NC_004337:309833:3269163269163280791164Shigella flexneri 2a str. 301, complete genomeputative phage integrase3e-32136
NC_004741:310382:3138433138433150061164Shigella flexneri 2a str. 2457T, complete genomeputative phage integrase2e-31134
NC_017328:335160:347776347776348240465Shigella flexneri 2002017 chromosome, complete genomeputative phage integrase2e-31134
NC_004337:309833:311291311291311755465Shigella flexneri 2a str. 301, complete genomeputative phage integrase2e-31134
NC_012751:1538500:1538746153874615398911146Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeAPSE-2 prophage; integrase4e-31133
NC_011205:609464:6170646170646182271164Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853prophage DLP12 integrase9e-31132
NC_011083:374000:3768503768503780131164Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,site-specific recombinase, phage integrase family2e-30131
NC_006905:368942:3728473728473740101164Salmonella enterica subsp. enterica serovar Choleraesuis strInt2e-30131
NC_011094:593100:6007016007016018641164Salmonella enterica subsp. enterica serovar Schwarzengrund strprophage DLP12 integrase1e-30131
NC_016860:364981:3688873688873700501164Salmonella enterica subsp. enterica serovar Typhimurium strintegrase2e-30130
NC_020418:2084937:2084937208493720860881152Morganella morganii subsp. morganii KT, complete genomePhage integrase6e-30129
NC_012759:461680:4667984667984679611164Escherichia coli BW2952 chromosome, complete genomeDLP12 prophage; putative integrase1e-29128
AC_000091:558920:5640385640385652011164Escherichia coli W3110 DNA, complete genomepredicted integrase1e-29128
NC_010473:498252:5033705033705045331164Escherichia coli str. K-12 substr. DH10B, complete genomeDLP12 prophage; predicted integrase1e-29128
NC_000913:558920:5640385640385652011164Escherichia coli K12, complete genomeDLP12 prophage; predicted integrase1e-29128
NC_011751:643976:6449436449436461061164Escherichia coli UMN026 chromosome, complete genomeputative integrase; DLP12 prophage3e-29127
NC_011415:600375:6083326083326094951164Escherichia coli SE11 chromosome, complete genomephage integrase3e-29127
NC_012947:3231893:3247313324731332484761164Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeintegrase3e-29127
NC_012967:531000:5369295369295380921164Escherichia coli B str. REL606 chromosome, complete genomeputative integrase3e-29127
NC_013282:1200993:1204148120414812053111164Cronobacter turicensis, complete genomeProphage DLP12 integrase1e-28124
NC_009567:904922:924429924429925310882Haemophilus influenzae PittGG chromosome, complete genomehypothetical protein6e-22102
NC_014922:825396:8292718292718302961026Haemophilus influenzae F3047 chromosome, complete genomeProphage integrase7e-22102
NC_015731:3274739:3293661329366132946981038Nitrosomonas sp. Is79A3 chromosome, complete genomeintegrase family protein2e-21100
NC_009074:3791232:380255538025553802923369Burkholderia pseudomallei 668 chromosome I, complete sequencesite-specific recombinase, phage integrase family3e-2097.1
NC_011740:2737467:275423227542322754492261Escherichia fergusonii ATCC 35469, complete genomehypothetical protein8e-2095.9
NC_007298:1129889:1137870113787011388861017Dechloromonas aromatica RCB, complete genomePhage integrase2e-1890.9
NC_010513:1162232:117499511749951175825831Xylella fastidiosa M12 chromosome, complete genomephage integrase7e-1889.4
NC_012724:1308000:1310925131092513119921068Burkholderia glumae BGR1 chromosome 1, complete genomeProphage integrase2e-1787.4
NC_015731:2148517:2150716215071621518041089Nitrosomonas sp. Is79A3 chromosome, complete genomeintegrase family protein2e-1684.3
NC_016809:389561:4020064020064030491044Haemophilus influenzae 10810, complete genomeDLP12 prophage integrase3e-1683.6
NC_020260:2725201:274167127416712741832162Cronobacter sakazakii Sp291, complete genomeprophage integrase3e-1683.6
NC_007434:1809946:185433418543341854720387Burkholderia pseudomallei 1710b chromosome I, complete sequenceprophage DLP12 integrase3e-1580.5
NC_007520:903799:9043479043479053721026Thiomicrospira crunogena XCL-2, complete genomePhage integrase4e-1580.1
NC_009074:3791232:380235838023583802657300Burkholderia pseudomallei 668 chromosome I, complete sequencesite-specific recombinase, phage integrase family7e-1475.9
NC_007759:2179000:2183062218306221841561095Syntrophus aciditrophicus SB, complete genomephage integrase family protein1e-1375.5
NC_009074:1470689:149013114901311490529399Burkholderia pseudomallei 668 chromosome I, complete sequencesite-specific recombinase, phage integrase family1e-1375.1
NC_009076:3876733:388817438881743888692519Burkholderia pseudomallei 1106a chromosome I, complete sequencesite-specific recombinase, phage integrase family3e-1373.9
NC_015259:673662:7011397011397022691131Polymorphum gilvum SL003B-26A1 chromosome, complete genomeIntegrase family protein3e-1373.6
NC_015259:485015:5473145473145485251212Polymorphum gilvum SL003B-26A1 chromosome, complete genomeIntegrase family protein4e-1373.6
NC_015388:1020747:102930310293031030148846Desulfobacca acetoxidans DSM 11109 chromosome, complete genomeintegrase family protein4e-1373.6
NC_015593:2841856:2849928284992828509651038Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completeintegrase family protein1e-1271.6
NC_011989:594353:6107606107606117911032Agrobacterium vitis S4 chromosome 1, complete sequenceIntegrase3e-1270.5
NC_008702:2039462:2046178204617820472541077Azoarcus sp. BH72, complete genomesite-specific recombinase, phage integrase family3e-1270.5
NC_014006:2932959:2935029293502929360661038Sphingobium japonicum UT26S chromosome 1, complete genomeputative integrase4e-1270.1
NC_012108:2037429:2046862204686220479591098Desulfobacterium autotrophicum HRM2, complete genomehypothetical protein4e-1270.1
NC_010814:1441327:1473385147338514746501266Geobacter lovleyi SZ, complete genomeintegrase family protein4e-1270.1
NC_006350:3957454:396679739667973967651855Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative bacteriophage integrase4e-1270.1
NC_014006:2932959:294086529408652941296432Sphingobium japonicum UT26S chromosome 1, complete genomeputative integrase7e-1269.3
NC_007651:3719191:373247537324753732954480Burkholderia thailandensis E264 chromosome I, complete sequencesite-specific recombinase, phage integrase family8e-1269.3
NC_008825:564392:5822395822395832431005Methylibium petroleiphilum PM1, complete genomehypothetical protein1e-1168.9
NC_008789:350650:3635873635873647261140Halorhodospira halophila SL1, complete genomephage integrase family protein6e-1166.2
NC_014006:2932959:293965229396522939894243Sphingobium japonicum UT26S chromosome 1, complete genomeputative integrase1e-1065.5
NC_013854:2148215:215822121582212159126906Azospirillum sp. B510, complete genomeintegrase1e-1065.5
NC_008609:3921113:3938275393827539394831209Pelobacter propionicus DSM 2379, complete genomephage integrase family protein2e-1064.7
NC_005139:1784000:1822239182223918234471209Vibrio vulnificus YJ016 chromosome I, complete sequenceintegrase3e-1063.9
NC_007973:2150962:217175821717582172324567Ralstonia metallidurans CH34 chromosome 1, complete sequencephage integrase3e-1063.9
NC_004459:2443000:2501649250164925028571209Vibrio vulnificus CMCP6 chromosome I, complete sequenceIntegrase5e-1063.2
NC_011757:5693584:5696052569605256971161065Methylobacterium chloromethanicum CM4, complete genomeintegrase family protein7e-1062.8
NC_011750:527470:532595532595532762168Escherichia coli IAI39 chromosome, complete genome8e-1062.4
NC_016812:258500:2644322644322655201089Sinorhizobium fredii HH103, complete genomehypothetical protein2e-0961.6
NC_007651:3560652:356953635695363570204669Burkholderia thailandensis E264 chromosome I, complete sequencesite-specific recombinase, phage integrase family1e-0961.6
NC_018678:87064:9596595965970681104Alteromonas macleodii str. 'English Channel 673' chromosome,integrase2e-0961.2
NC_015458:2338437:2340983234098323420711089Pusillimonas sp. T7-7 chromosome, complete genomesite-specific recombinase, phage integrase family2e-0961.2
NC_014010:1020488:1055855105585510572671413Candidatus Puniceispirillum marinum IMCC1322 chromosome, completehypothetical protein2e-0960.8
NC_003295:1654000:1669739166973916708031065Ralstonia solanacearum GMI1000, complete genomePUTATIVE INTEGRASE/RECOMBINASE PROTEIN3e-0960.5
NC_014355:243543:2579012579012590221122Candidatus Nitrospira defluvii, complete genomephage integrase3e-0960.5
NC_015850:1006980:1008592100859210096021011Acidithiobacillus caldus SM-1 chromosome, complete genomeputative phage integrase4e-0960.1
NC_013456:1843000:1843625184362518448301206Vibrio sp. Ex25 chromosome 1, complete genomeintegrase4e-0960.1
NC_013722:3117442:3131487313148731325811095Xanthomonas albilineans, complete genomeputative shufflon-specific dna recombinase protein1e-0858.5
NC_008380:4968492:497566649756664976619954Rhizobium leguminosarum bv. viciae 3841, complete genomeputative shufflon-specific DNA recombinase1e-0858.5
NC_007626:959684:9702309702309713091080Magnetospirillum magneticum AMB-1, complete genomeIntegrase2e-0857.8
NC_014355:1223243:1233478123347812345481071Candidatus Nitrospira defluvii, complete genomeputative integrase2e-0857.8
NC_014355:288000:2962442962442972841041Candidatus Nitrospira defluvii, complete genomeputative phage integrase2e-0857.8
NC_011985:1831961:1844038184403818453331296Agrobacterium radiobacter K84 chromosome 1, complete genometyrosine site-specific integrase/recombinase protein3e-0857.4
NC_015942:403296:4146714146714157651095Acidithiobacillus ferrivorans SS3 chromosome, complete genomeintegrase family protein2e-0857.4
NC_004578:568236:5847805847805860211242Pseudomonas syringae pv. tomato str. DC3000, complete genomesite-specific recombinase, phage integrase family4e-0857
NC_008313:2685531:2688767268876726898131047Ralstonia eutropha H16 chromosome 1, complete sequencephage integrase family protein4e-0856.6
NC_016631:4113794:4148964414896441500041041Granulicella mallensis MP5ACTX8 chromosome, complete genomeintegrase family protein6e-0856.2
NC_015422:3581848:3595358359535835966021245Alicycliphilus denitrificans K601 chromosome, complete genomeintegrase family protein6e-0856.2
NC_010682:3313944:3349996334999633510511056Ralstonia pickettii 12J chromosome 1, complete sequenceintegrase family protein6e-0856.2
NC_015681:1558873:1561014156101415622041191Thermodesulfatator indicus DSM 15286 chromosome, complete genomeintegrase family protein6e-0856.2
NC_007760:4055860:408811340881134088940828Anaeromyxobacter dehalogenans 2CP-C, complete genomePhage integrase5e-0856.2
NC_009074:2970435:2991895299189529930401146Burkholderia pseudomallei 668 chromosome I, complete sequencephage integrase9e-0855.8
NC_008060:476861:4883074883074894521146Burkholderia cenocepacia AU 1054 chromosome 1, complete sequencephage integrase8e-0855.8
NC_008542:1021848:1032954103295410340991146Burkholderia cenocepacia HI2424 chromosome 1, complete sequencephage integrase family protein8e-0855.8
NC_014972:1126426:1145414114541411465951182Desulfobulbus propionicus DSM 2032 chromosome, complete genomeintegrase family protein8e-0855.8
NC_008752:415599:431227431227432225999Acidovorax avenae subsp. citrulli AAC00-1, complete genomephage integrase family protein1e-0755.5
NC_020911:4465500:4465774446577444670331260Octadecabacter antarcticus 307, complete genomeDNA integration/recombination/inversion protein1e-0755.5
NC_014623:2418762:2452315245231524535021188Stigmatella aurantiaca DW4/3-1 chromosome, complete genomephage integrase family protein1e-0755.1
NC_014623:1600360:1600360160036016015471188Stigmatella aurantiaca DW4/3-1 chromosome, complete genomephage integrase family protein1e-0755.1
NC_008260:2340824:2352446235244623535491104Alcanivorax borkumensis SK2, complete genomeshufflon-specific DNA recombinase1e-0755.1
NC_012988:4633930:4641261464126146422741014Methylobacterium extorquens DM4, complete genomeintegrase1e-0755.1
NC_010084:534937:541878541878542864987Burkholderia multivorans ATCC 17616 chromosome 1, completeintegrase family protein2e-0754.7
NC_015580:141379:1621711621711633671197Novosphingobium sp. PP1Y, complete genomephage integrase2e-0754.7
NC_014217:800406:808989808989809348360Starkeya novella DSM 506 chromosome, complete genomehypothetical protein2e-0754.3
NC_014355:4151798:4167771416777141690841314Candidatus Nitrospira defluvii, complete genomeputative phage integrase2e-0754.3
NC_006155:2208686:221904122190412219418378Yersinia pseudotuberculosis IP 32953, complete genomeputative prophage integrase2e-0754.3
NC_010634:2124185:213530221353022135679378Yersinia pseudotuberculosis PB1/+, complete genomeintegrase family protein2e-0754.3
NC_012856:3000839:3011439301143930124941056Ralstonia pickettii 12D chromosome 1, complete genomeintegrase family protein2e-0754.3
NC_010172:4185904:4194558419455841955621005Methylobacterium extorquens PA1, complete genomeintegrase family protein3e-0753.9
NC_014414:1104386:1104386110438611056511266Parvularcula bermudensis HTCC2503 chromosome, complete genomePhage integrase3e-0753.9
NC_021177:4221309:4248131424813142494081278Streptomyces fulvissimus DSM 40593, complete genomeIntegrase4e-0753.5
NC_015381:429940:4389684389684400111044Burkholderia gladioli BSR3 chromosome 1, complete sequencephage integrase6e-0753.1
NC_020126:4084114:4090839409083940920531215Myxococcus stipitatus DSM 14675, complete genomephage integrase family site specific recombinase5e-0753.1
NC_014216:2538500:255809425580942559092999Desulfurivibrio alkaliphilus AHT2 chromosome, complete genomeintegrase family protein5e-0753.1
NC_011958:976500:9867399867399880431305Rhodobacter sphaeroides KD131 chromosome 2, complete genomePhage integrase5e-0753.1
NC_014623:1074299:1120983112098311221911209Stigmatella aurantiaca DW4/3-1 chromosome, complete genomephage integrase family protein5e-0753.1
NC_015379:6226661:6232535623253562336681134Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative phage integrase7e-0752.8
NC_008060:2913671:2934382293438229354251044Burkholderia cenocepacia AU 1054 chromosome 1, complete sequencephage integrase8e-0752.8
NC_008542:483761:4912204912204922631044Burkholderia cenocepacia HI2424 chromosome 1, complete sequencephage integrase family protein8e-0752.8
NC_008687:302450:3053223053223065031182Paracoccus denitrificans PD1222 chromosome 2, complete sequencephage integrase family protein8e-0752.4
NC_015064:2341152:2360406236040623614641059Acidobacterium sp. MP5ACTX9 chromosome, complete genomeintegrase family protein9e-0752.4
NC_012796:2757500:2757717275771727589461230Desulfovibrio magneticus RS-1, complete genomesite-specific recombinase1e-0652
NC_012880:3529017:3548469354846935495931125Dickeya dadantii Ech703, complete genomeintegrase family protein1e-0652
NC_015711:7905360:7927693792769379289131221Myxococcus fulvus HW-1 chromosome, complete genomephage integrase family site specific recombinase1e-0652
NC_013729:380312:3997093997094010041296Kribbella flavida DSM 17836, complete genomeintegrase family protein1e-0652
NC_012779:2127542:215020621502062151093888Edwardsiella ictaluri 93-146, complete genomeintegrase family protein1e-0651.6
NC_011770:4542183:4545251454525145462671017Pseudomonas aeruginosa LESB58, complete genomeputative bacteriophage integrase2e-0651.2
NC_017249:4365935:4371805437180543730791275Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein2e-0651.2
NC_008095:6052139:6071158607115860721621005Myxococcus xanthus DK 1622, complete genomesite-specific recombinase, phage integrase family2e-0651.2
NC_016602:3122700:3133060313306031342471188Vibrio furnissii NCTC 11218 chromosome 1, complete sequencephage integrase family protein3e-0650.8
NC_011206:1233985:123407912340791235074996Acidithiobacillus ferrooxidans ATCC 53993, complete genomeintegrase family protein3e-0650.8
NC_007651:72952:980039800398578576Burkholderia thailandensis E264 chromosome I, complete sequenceFels-2 prophage protein2e-0650.8
NC_009429:622359:6440406440406451941155Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, completehypothetical protein2e-0650.8
NC_020260:312805:3177533177533187661014Cronobacter sakazakii Sp291, complete genomephage integrase family site-specific recombinase3e-0650.4
NC_015856:3059737:307056230705623071161600Collimonas fungivorans Ter331 chromosome, complete genomesite-specific recombinase, phage integrase family3e-0650.4
NC_020126:6791726:681055668105566811062507Myxococcus stipitatus DSM 14675, complete genomeintegrase family protein4e-0650.1
NC_012917:2971702:2989228298922829902351008Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeintegrase family protein5e-0650.1
NC_015410:1324313:1339411133941113404391029Pseudomonas mendocina NK-01 chromosome, complete genomephage integrase family protein6e-0649.7
NC_013929:6251989:6271489627148962727271239Streptomyces scabiei 87.22 chromosome, complete genomeintegrase6e-0649.7
NC_017030:8599515:8613843861384386150331191Corallococcus coralloides DSM 2259 chromosome, complete genomephage integrase family site specific recombinase6e-0649.7
NC_007626:3996000:4009811400981140109021092Magnetospirillum magneticum AMB-1, complete genomeIntegrase5e-0649.7
NC_009952:366959:3847653847653859581194Dinoroseobacter shibae DFL 12, complete genomephage integrase family protein5e-0649.7
NC_014830:335380:3381953381953393941200Intrasporangium calvum DSM 43043 chromosome, complete genomeintegrase family protein8e-0649.3
NC_007575:1694877:1714292171429217153981107Sulfurimonas denitrificans DSM 1251, complete genomePhage integrase8e-0649.3
NC_007519:2847816:2851683285168328529361254Desulfovibrio alaskensis G20 chromosome, complete genomesite-specific recombinase XerD-like7e-0649.3
NC_017186:361444:3676773676773690231347Amycolatopsis mediterranei S699 chromosome, complete genomeintegrase/recombinase7e-0649.3
NC_009142:267550:2744052744052757241320Saccharopolyspora erythraea NRRL 2338, complete genomeintegrase (recombinase)7e-0649.3
NC_008043:615049:6341046341046353391236Silicibacter sp. TM1040 mega plasmid, complete sequencephage integrase7e-0649.3
NC_013282:3389619:3405674340567434066931020Cronobacter turicensis, complete genomeIntegrase7e-0649.3
NC_012108:1973861:1990732199073219918861155Desulfobacterium autotrophicum HRM2, complete genometyrosine recombinase XerD7e-0649.3
NC_020418:3022891:3035219303521930362321014Morganella morganii subsp. morganii KT, complete genomehypothetical protein1e-0548.9