Pre_GI: BLASTP Hits

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Query: NC_004741:3041294:3087216 Shigella flexneri 2a str. 2457T, complete genome

Start: 3087216, End: 3087437, Length: 222

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:3088907:313609431360943136315222Shigella flexneri 2002017 chromosome, complete genomeYeeT7e-38155
NC_004337:3049118:309638930963893096610222Shigella flexneri 2a str. 301, complete genomehypothetical protein7e-38155
NC_008253:4817864:483508348350834835304222Escherichia coli 536, complete genomehypothetical protein YeeT7e-38155
NC_011750:4390000:441248344124834412704222Escherichia coli IAI39 chromosome, complete genomehypothetical protein7e-38155
NC_007946:4875997:489458548945854894806222Escherichia coli UTI89, complete genomehypothetical protein YeeT7e-38155
NC_008253:3161311:317400531740053174226222Escherichia coli 536, complete genomehypothetical protein YeeT6e-37152
NC_008253:334467:357997357997358218222Escherichia coli 536, complete genomehypothetical protein YeeT6e-37152
NC_007946:1119000:113901811390181139239222Escherichia coli UTI89, complete genomehypothetical protein YeeT4e-37152
NC_013361:5580741:558128055812805581501222Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein2e-36150
NC_009801:4882684:488487248848724885093222Escherichia coli E24377A, complete genomehypothetical protein2e-36150
NC_011745:3405520:342422234242223424443222Escherichia coli ED1a chromosome, complete genomehypothetical protein6e-36149
NC_011745:5114500:511642051164205116641222Escherichia coli ED1a chromosome, complete genomehypothetical protein6e-36149
NC_011083:4547825:456666545666654566886222Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein5e-36149
NC_004431:4319152:433930443393044339525222Escherichia coli CFT073, complete genomeHypothetical protein yeeT4e-36149
NC_013361:3313284:333075733307573330978222Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein1e-35147
NC_013716:5201097:522183752218375222058222Citrobacter rodentium ICC168, complete genomehypothetical protein1e-35147
NC_013353:3669500:367163236716323671853222Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein5e-35145
AP010958:3669500:367163236716323671853222Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein5e-35145
NC_020181:5130513:513272451327245132945222Enterobacter aerogenes EA1509E, complete genomeYeeT2e-24110
NC_016612:443398:455615455615455836222Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein1e-23108
NC_014618:4114004:411995641199564120177222Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein1e-23108
NC_015663:549425:562728562728562949222Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein2e-23107
NC_014618:690056:723742723742723963222Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein2e-22104
NC_010498:301000:317624317624317845222Escherichia coli SMS-3-5, complete genomehypothetical protein2e-22104
NC_020064:3609844:363465336346533634874222Serratia marcescens FGI94, complete genomeProtein of unknown function (DUF987)2e-22103
NC_011283:4966471:498424349842434984464222Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein3e-22103
NC_020260:603796:619596619596619817222Cronobacter sakazakii Sp291, complete genomehypothetical protein5e-22102
NC_016816:1137904:114936411493641149585222Pantoea ananatis LMG 5342, complete genomehypothetical protein7e-22102
NC_014121:3776902:379271437927143792941228Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein1e-21101
NC_020260:882307:893724893724893951228Cronobacter sakazakii Sp291, complete genomehypothetical protein1e-21101
NC_016902:44744:484804848048701222Escherichia coli KO11FL chromosome, complete genomehypothetical protein1e-1995.1
CP002185:4035502:405737240573724057593222Escherichia coli W, complete genomeconserved hypothetical protein1e-1995.1
CP002516:44744:484804848048701222Escherichia coli KO11, complete genomeprotein of unknown function DUF9871e-1995.1
NC_009436:522649:542424542424542618195Enterobacter sp. 638, complete genomehypothetical protein9e-1785.5
NC_012759:2633949:266071126607112660911201Escherichia coli BW2952 chromosome, complete genomehypothetical protein1e-1685.1
NC_010473:2839902:286666428666642866864201Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein1e-1685.1
AC_000091:2747520:277553327755332775733201Escherichia coli W3110 DNA, complete genomehypothetical protein1e-1685.1
NC_000913:2746886:277489927748992775099201Escherichia coli K12, complete genomehypothetical protein1e-1685.1