Pre_GI: BLASTP Hits

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Query: NC_004741:3041294:3068384 Shigella flexneri 2a str. 2457T, complete genome

Start: 3068384, End: 3068767, Length: 384

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:3088907:311600031160003116383384Shigella flexneri 2002017 chromosome, complete genomehypothetical protein2e-71266
NC_004337:3049118:307620530762053076588384Shigella flexneri 2a str. 301, complete genomehypothetical protein2e-71266
NC_009800:349592:354971354971355354384Escherichia coli HS, complete genomehypothetical protein6e-71265
NC_011751:3453683:350695035069503507333384Escherichia coli UMN026 chromosome, complete genomehypothetical protein3e-65246
AP010958:3627355:365689236568923657275384Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted protein7e-65245
NC_013353:3627355:365689236568923657275384Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein7e-65245
NC_013941:3676146:370511437051143705497384Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeDNA-directed RNA polymerase, beta subunit/140 kD subunit7e-65245
NC_004431:3409389:348381234838123484267456Escherichia coli CFT073, complete genomehypothetical protein5e-64242
NC_004431:279868:286352286352286741390Escherichia coli CFT073, complete genomehypothetical protein2e-63240
NC_013716:5201097:523430252343025234691390Citrobacter rodentium ICC168, complete genomehypothetical protein6e-62235
NC_008253:3122148:315654231565423156925384Escherichia coli 536, complete genomehypothetical protein9e-61231
CP002797:2062006:208170220817022082103402Escherichia coli NA114, complete genomehypothetical protein8e-60228
NC_013353:2455052:247127424712742471675402Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein2e-59227
AP010958:2455052:247127424712742471675402Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted protein2e-59227
NC_015663:549425:570825570825571217393Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein3e-39160
NC_014618:4114004:413570341357034136107405Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein2e-1270.9
NC_009436:522649:541444541444541626183Enterobacter sp. 638, complete genomehypothetical protein9e-1268.9
CP002797:2062006:208130420813042081714411Escherichia coli NA114, complete genomehypothetical protein1e-1065.5
NC_013353:2455052:247087924708792471286408Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein1e-1064.7
AP010958:2455052:247087924708792471286408Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted protein1e-1064.7
NC_013421:1505176:151013715101371510514378Pectobacterium wasabiae WPP163, complete genomehypothetical protein2e-1064.7
NC_015663:549425:571278571278571706429Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein1e-0858.2