Pre_GI: BLASTP Hits

Some Help

Query: NC_004741:2741971:2755617 Shigella flexneri 2a str. 2457T, complete genome

Start: 2755617, End: 2755889, Length: 273

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008258:2905413:2908014290801429102662253Shigella flexneri 5 str. 8401, complete genomeputative enzyme6e-47185
NC_017328:2785309:2797883279788328001352253Shigella flexneri 2002017 chromosome, complete genomealpha amylase6e-47185
NC_004337:2747917:2759001275900127612532253Shigella flexneri 2a str. 301, complete genome4e-46182
NC_007384:2933625:2946772294677229483251554Shigella sonnei Ss046, complete genomeputative enzyme5e-44176
NC_009800:2788164:2803842280384228060942253Escherichia coli HS, complete genomealpha amylase family protein4e-44176
NC_010473:2839902:2876184287618428784362253Escherichia coli str. K-12 substr. DH10B, complete genome3e-44176
CP002185:2919752:2933758293375829347651008Escherichia coli W, complete genome3e-44176
CP002516:1165726:1171092117109211721351044Escherichia coli KO11, complete genomealpha amylase all-beta3e-44176
NC_016902:1165726:1171092117109211721351044Escherichia coli KO11FL chromosome, complete genomealpha amylase3e-44176
NC_010498:2847359:2860012286001228622642253Escherichia coli SMS-3-5, complete genomealpha amylase family protein3e-43173
NC_011415:3006794:302239430223943022666273Escherichia coli SE11 chromosome, complete genomehypothetical protein8e-43172
NC_011750:2928990:2952498295249829547502253Escherichia coli IAI39 chromosome, complete genomeputative alpha-amylase4e-43172
NC_011748:2973968:299899329989932999265273Escherichia coli 55989, complete genomehypothetical protein2e-42171
CU928160:2818750:283321328332132833485273Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein2e-42171
NC_000913:2746886:278639927863992786671273Escherichia coli K12, complete genomehypothetical protein2e-42171
CU928145:2973968:299899329989932999265273Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein2e-42171
AC_000091:2747520:278703327870332787305273Escherichia coli W3110 DNA, complete genomehypothetical protein2e-42171
NC_011741:2818750:283321328332132833485273Escherichia coli IAI1 chromosome, complete genomehypothetical protein2e-42171
NC_013364:3339768:335191833519183352190273Escherichia coli O111:H- str. 11128, complete genome2e-42171
NC_016822:3065426:308013330801333080405273Shigella sonnei 53G, complete genomealpha amylase2e-42171
NC_011751:3048490:3089751308975130920032253Escherichia coli UMN026 chromosome, complete genomeputative Alpha-amylase1e-41167
NC_013941:3300000:3346327334632733485792253Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein1e-40165
NC_002655:3538656:3577118357711835781251008Escherichia coli O157:H7 EDL933, complete genomeputative enzyme6e-41165
NC_002695:3468873:3509828350982835108351008Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein6e-41165
NC_011353:3573641:3614064361406436150711008Escherichia coli O157:H7 str. EC4115 chromosome, complete genome6e-41165
NC_013353:3238742:3250167325016732511741008Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein3e-34143
AP010958:3238742:3250167325016732511741008Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted protein3e-34143
NC_011601:2998326:301416130141613014541381Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein9e-1785.5