Pre_GI: BLASTP Hits

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Query: NC_004741:2593012:2603040 Shigella flexneri 2a str. 2457T, complete genome

Start: 2603040, End: 2603372, Length: 333

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008344:2374761:238842723884272388759333Nitrosomonas eutropha C91, complete genometranscriptional regulator, ArsR family protein5e-52202
NC_008344:669498:676501676501676833333Nitrosomonas eutropha C91, complete genometranscriptional regulator, ArsR family protein5e-52202
NC_010515:1124298:115057511505751150922348Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencetranscriptional regulator, ArsR family3e-30130
NC_009138:467268:502896502896503231336Herminiimonas arsenicoxydans, complete genomeArsenical resistance transcriptional regulator6e-30129
NC_007509:3668:482494824948584336Burkholderia sp. 383 chromosome 3, complete sequencetranscriptional regulator, ArsR family2e-29127
NC_010087:376918:415163415163415504342Burkholderia multivorans ATCC 17616 chromosome 3, completetranscriptional regulator, ArsR family1e-27121
NC_010801:505000:509354509354509695342Burkholderia multivorans ATCC 17616 chromosome 3, completeArsR family transcriptional regulator, ArsR1e-27121
NC_010087:376918:380430380430380771342Burkholderia multivorans ATCC 17616 chromosome 3, completetranscriptional regulator, ArsR family2e-27120
NC_012725:97681:976819768198013333Burkholderia glumae BGR1 plasmid bglu_4p, complete sequenceTranscriptional regulator, ArsR family protein4e-26116
NC_009138:3153576:316675531667553167093339Herminiimonas arsenicoxydans, complete genometranscriptional regulator, ArsR family2e-25114
NC_010681:221416:222391222391222723333Burkholderia phytofirmans PsJN chromosome 1, complete sequencetranscriptional regulator, ArsR family4e-25113
NC_005085:2609934:262343926234392623771333Chromobacterium violaceum ATCC 12472, complete genometranscription regulator protein, arsenical resistance operon repressor2e-24111
NC_014394:2577949:258363525836352583958324Gallionella capsiferriformans ES-2 chromosome, complete genometranscriptional regulator, ArsR family5e-24109
NC_010087:376918:380959380959381387429Burkholderia multivorans ATCC 17616 chromosome 3, completetranscriptional regulator, ArsR family9e-22102
NC_015138:4103457:410465841046584104960303Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeregulatory protein ArsR5e-2199.8
NC_015136:912276:934899934899935222324Burkholderia sp. CCGE1001 chromosome 1, complete sequenceregulatory protein ArsR5e-2199.8
NC_008687:302450:318787318787319146360Paracoccus denitrificans PD1222 chromosome 2, complete sequenceregulatory protein, ArsR5e-2199.4
NC_011894:5787990:583149058314905831849360Methylobacterium nodulans ORS 2060, complete genomeputative transcriptional regulator, ArsR family6e-2199.4
NC_015186:2908387:292629329262932926646354Acidiphilium multivorum AIU301, complete genomeputative arsenical resistance operon repressor1e-2098.2
NC_003296:1419992:142475814247581425081324Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePUTATIVE ARSENICAL RESISTANCE OPERON REPRESSOR TRANSCRIPTION REGULATOR PROTEIN9e-2095.5
NC_010943:2422838:245329124532912453605315Stenotrophomonas maltophilia K279a, complete genomeputative ArsR family transcriptional regulator2e-1994.4
NC_010084:2484000:252953325295332529877345Burkholderia multivorans ATCC 17616 chromosome 1, completeArsR family transcriptional regulator2e-1994.4
NC_007347:1215358:123082912308291231152324Ralstonia eutropha JMP134 chromosome 1, complete sequenceregulatory protein, ArsR3e-1993.6
NC_016589:2875000:288107328810732881414342Burkholderia sp. YI23 chromosome 1, complete sequenceArsR family transcriptional regulator6e-1992.8
NC_011071:2207385:222219322221932222507315Stenotrophomonas maltophilia R551-3, complete genometranscriptional regulator, ArsR family8e-1992.4
NC_011149:2040396:204412920441292044503375Salmonella enterica subsp. enterica serovar Agona str. SL483,arsenic resistance transcriptional regulator1e-1891.7
NC_010524:3445641:345079634507963451122327Leptothrix cholodnii SP-6, complete genometranscriptional regulator, ArsR family2e-1890.9
NC_007298:750361:767060767060767395336Dechloromonas aromatica RCB, complete genomeregulatory protein, ArsR2e-1890.9
NC_007908:4069150:408757940875794087908330Rhodoferax ferrireducens T118, complete genometranscriptional regulator, ArsR family4e-1890.1
NC_009138:1974935:198197019819701982293324Herminiimonas arsenicoxydans, complete genomeArs R transcriptional regulator5e-1889.7
NC_012880:3645304:365480636548063655180375Dickeya dadantii Ech703, complete genometranscriptional regulator, TrmB4e-1889.7
NC_014640:5047201:505207850520785052404327Achromobacter xylosoxidans A8 chromosome, complete genomeArsR family transcriptional regulator1e-1788.6
NC_010682:3745000:374603037460303746353324Ralstonia pickettii 12J chromosome 1, complete sequencetranscriptional regulator, ArsR family3e-1787
NC_010170:4800000:481090848109084811339432Bordetella petrii, complete genomeputative transcriptional regulator3e-1787
NC_010794:1476494:148075814807581481117360Methylacidiphilum infernorum V4, complete genomeTranscriptional regulator containing HTH domain, ArsR6e-1785.9
NC_011894:5787990:580184158018415802200360Methylobacterium nodulans ORS 2060, complete genomeputative transcriptional regulator, ArsR family2e-1684.3
NC_009053:1257302:126140912614091261723315Actinobacillus pleuropneumoniae L20, complete genomeputative transcriptional regulator2e-1581.3
NC_010162:7899980:790816979081697908420252Sorangium cellulosum 'So ce 56', complete genomeArsR family transcriptional regulator4e-1373.2
NC_010943:2422838:245754224575422457985444Stenotrophomonas maltophilia K279a, complete genomeputative ArsR family regulatory protein4e-1270.1
NC_007722:2172000:218164721816472181961315Erythrobacter litoralis HTCC2594, complete genomehypothetical transcriptional regulator, ArsR family protein8e-1268.9
NC_009668:529175:532742532742533107366Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceregulatory protein ArsR2e-1168.2
NC_014972:1407632:143637414363741436706333Desulfobulbus propionicus DSM 2032 chromosome, complete genomeArsR family transcriptional regulator2e-0960.8
NC_011415:3887997:389565338956533895949297Escherichia coli SE11 chromosome, complete genomehypothetical protein3e-0960.5
CP002185:3822470:384628538462853846581297Escherichia coli W, complete genomeArsR family transcriptional regulator7e-0959.3
CP002516:246767:259492259492259788297Escherichia coli KO11, complete genomeregulatory protein ArsR7e-0959.3
NC_007613:3470314:349575634957563496052297Shigella boydii Sb227, complete genomehypothetical protein7e-0959.3
CU928145:3983432:401560440156044015900297Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein7e-0959.3
NC_009801:3956917:396231739623173962613297Escherichia coli E24377A, complete genometranscriptional regulator, ArsR family7e-0959.3
AP010958:4313462:431771743177174318013297Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted protein7e-0959.3
NC_011748:3983432:401560440156044015900297Escherichia coli 55989, complete genomehypothetical protein7e-0959.3
NC_013353:4313462:431771743177174318013297Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein7e-0959.3
NC_013361:4566779:457127645712764571572297Escherichia coli O26:H11 str. 11368 chromosome, complete genomeDNA-binding transcriptional regulator7e-0959.3
NC_013364:4306000:430868643086864308982297Escherichia coli O111:H- str. 11128, complete genomehypothetical protein7e-0959.3
NC_016822:3946500:394902939490293949325297Shigella sonnei 53G, complete genomehypothetical protein7e-0959.3
NC_016902:246767:259492259492259788297Escherichia coli KO11FL chromosome, complete genomeregulatory protein ArsR7e-0959.3
NC_010498:3838419:386211038621103862430321Escherichia coli SMS-3-5, complete genomeArsR family transcriptional regulator6e-0959.3
NC_011741:3709081:371449237144923714851360Escherichia coli IAI1 chromosome, complete genomehypothetical protein9e-0958.9
CU928160:3709081:371449237144923714851360Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein9e-0958.9
NC_009720:4367584:438109743810974381984888Xanthobacter autotrophicus Py2, complete genomeprotein tyrosine phosphatase3e-0857.4