Pre_GI: BLASTP Hits

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Query: NC_004741:2593012:2602155 Shigella flexneri 2a str. 2457T, complete genome

Start: 2602155, End: 2602892, Length: 738

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008344:2374761:238890723889072389644738Nitrosomonas eutropha C91, complete genomeResolvase, N-terminal domain4e-115414
NC_008344:669498:675616675616676353738Nitrosomonas eutropha C91, complete genomeResolvase, N-terminal domain4e-115414
NC_011092:76993:793967939680133738Salmonella enterica subsp. enterica serovar Schwarzengrund strresolvase2e-114411
NC_009651:19909:217582175822459702Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN5,putative resolvase4e-104377
NC_003919:2824000:283225428322542833162909Xanthomonas axonopodis pv. citri str. 306, complete genomeresolvase1e-86319
NC_014170:57954:739667396674589624Xenorhabdus nematophila ATCC 19061 plasmid XNC1_p, completeResolvase1e-63242
NC_010606:25090:375583755838049492Acinetobacter baumannii ACICU plasmid pACICU2, complete sequenceResolvase, N-terminal domain9e-44177
NC_018605:846500:865987865987866646660Cardinium endosymbiont cPer1 of Encarsia pergandiella, completeResolvase4e-22104
NC_009667:1371924:138381113838111384428618Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequenceresolvase domain-containing protein7e-22103
NC_009790:42112:558215582156462642Escherichia coli E24377A plasmid pETEC_74, complete sequenceresolvase domain protein8e-22103
NC_009668:594500:606673606673607299627Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceresolvase domain-containing protein1e-21103
NC_010693:1:551955196166648Erwinia tasmaniensis plasmid pET46, complete sequenceResolvase3e-21102
NC_010693:1:148011480115436636Erwinia tasmaniensis plasmid pET46, complete sequenceResolvase8e-21100
NC_008740:637870:656388656388657020633Marinobacter aquaeolei VT8, complete genomeResolvase, N-terminal domain8e-21100
NC_003305:922357:941775941775942407633Agrobacterium tumefaciens str. C58 chromosome linear, completeresolvase2e-2099.4
NC_003063:1128370:113234911323491133101753Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein2e-2099.4
NC_009439:4661102:467014646701464670841696Pseudomonas mendocina ymp, complete genomeresolvase domain-containing protein5e-1891.3
NC_009052:2512373:252557125255712526209639Shewanella baltica OS155, complete genomeResolvase, N-terminal domain2e-1789.7
NC_010511:7553703:757965575796557580287633Methylobacterium sp. 4-46 chromosome, complete genomeresolvase domain-containing protein6e-1787.8
NC_008027:1847040:185906918590691859713645Pseudomonas entomophila L48, complete genomeresolvase1e-1687
NC_017047:1796000:180530718053071805939633Rahnella aquatilis HX2 chromosome, complete genomeresolvase2e-1686.3
NC_013850:2103469:213179121317912132414624Klebsiella variicola At-22 chromosome, complete genomeResolvase domain protein2e-1686.3
NC_011283:4438500:444919844491984449821624Klebsiella pneumoniae 342 chromosome, complete genomeresolvase2e-1685.9
NC_013457:1703201:171521517152151715829615Vibrio sp. Ex25 chromosome 2, complete genomeresolvase3e-1685.5
NC_011283:2185462:219824121982412198864624Klebsiella pneumoniae 342 chromosome, complete genomeresolvase6e-1684.7
NC_009378:106193:124395124395125015621Yersinia pestis Pestoides F plasmid MT, complete sequenceresolvase5e-1581.3
NC_008120:62000:838588385884478621Yersinia pestis Antiqua plasmid pMT, complete sequenceresolvase5e-1581.3
NC_005815:61148:959419594196561621Yersinia pestis biovar Microtus str. 91001 plasmid pMT1, completeputative resolvase5e-1581.3
NC_004838:51013:601616016160781621Yersinia pestis KIM plasmid pMT-1, complete sequenceputative resolvase5e-1581.3
NC_008118:56777:883038830388923621Yersinia pestis Nepal516 plasmid pMT, complete sequenceresolvase5e-1581.3
NC_003134:64672:712167121671836621Yersinia pestis CO92 plasmid pMT1, complete sequenceputative resolvase5e-1581.3
NC_010158:92819:101955101955102575621Yersinia pestis Angola plasmid pMT-pPCP, complete sequenceputative resolvase5e-1581.3
NC_014121:2330451:234687723468772347491615Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative resolvase8e-1580.9
NC_010524:1005355:101424410142441014867624Leptothrix cholodnii SP-6, complete genomeResolvase domain8e-1580.9
NC_004547:2810151:282176428217642822402639Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeresolvase1e-1480.5
NC_010501:4989455:500373550037355004379645Pseudomonas putida W619, complete genomeResolvase domain4e-1478.6
NC_002695:3189425:320075132007513201377627Escherichia coli O157:H7 str. Sakai, complete genomeputative resolvase6e-1477.8
NC_002655:3260500:327070732707073271333627Escherichia coli O157:H7 EDL933, complete genomeputative resolvase6e-1477.8
NC_011353:3276734:330486733048673305493627Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeresolvase domain-containing protein6e-1477.8
NC_013008:3231414:325973832597383260364627Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeresolvase6e-1477.8
NC_013941:2928000:294181729418172942443627Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeResolvase domain protein6e-1477.8
NC_020260:440000:449060449060449671612Cronobacter sakazakii Sp291, complete genomeresolvase1e-1376.6
NC_007973:2773427:278232027823202782988669Ralstonia metallidurans CH34 chromosome 1, complete sequenceResolvase-like protein1e-1170.1
NC_010999:623489:624948624948625535588Lactobacillus casei, complete genomePutative uncharacterized protein orf-1955e-1064.7
NC_010610:755000:783261783261783845585Lactobacillus fermentum IFO 3956, complete genomehypothetical protein1e-0963.5
NC_010545:11950:274182741827957540Corynebacterium urealyticum DSM 7109, complete genomeputative resolvase2e-0962.8
NC_002939:1866651:187691018769101877482573Geobacter sulfurreducens PCA, complete genomeintegrative genetic element Gsu5, resolvase2e-0962.8
NC_017208:4435573:447154344715434472124582Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeSite-specific recombinase, resolvase family (DNA invertase-like protein)3e-0962.4
NC_008609:2787274:279950027995002800057558Pelobacter propionicus DSM 2379, complete genomeResolvase, N-terminal domain8e-0960.8
NC_008526:565902:568156568156568743588Lactobacillus casei ATCC 334, complete genomeSite-specific recombinase, DNA invertase Pin related protein8e-0960.8
NC_013165:2240377:227107522710752271659585Slackia heliotrinireducens DSM 20476, complete genomesite-specific recombinase, DNA invertase Pin7e-0960.8
NC_014639:1538782:157085215708521571427576Bacillus atrophaeus 1942 chromosome, complete genometransposon resolvase7e-0857.8
CP002207:1538782:157085215708521571427576Bacillus atrophaeus 1942, complete genometransposon resolvase7e-0857.8
NC_011146:4196652:420612142061214206693573Geobacter bemidjiensis Bem, complete genomeResolvase domain1e-0757
NC_013209:2782500:278940827894082789986579Acetobacter pasteurianus IFO 3283-01, complete genomeDNA resolvase2e-0756.2
NC_017100:2782303:278920027892002789778579Acetobacter pasteurianus IFO 3283-03, complete genomeDNA resolvase2e-0756.2
NC_017108:2779303:278653727865372787115579Acetobacter pasteurianus IFO 3283-12, complete genomeDNA resolvase2e-0756.2
NC_017111:2779321:278655527865552787133579Acetobacter pasteurianus IFO 3283-32, complete genomeDNA resolvase2e-0756.2
NC_017121:2781000:278795727879572788535579Acetobacter pasteurianus IFO 3283-07, complete genomeDNA resolvase2e-0756.2
NC_017125:2782283:278918027891802789758579Acetobacter pasteurianus IFO 3283-22, complete genomeDNA resolvase2e-0756.2
NC_017146:2782325:278922227892222789800579Acetobacter pasteurianus IFO 3283-26, complete genomeDNA resolvase2e-0756.2
NC_017150:2689920:269715426971542697732579Acetobacter pasteurianus IFO 3283-01-42C, complete genomeDNA resolvase2e-0756.2
NC_011777:161505:174941174941175540600Bacillus cereus AH820 plasmid pAH820_272, complete sequencetransposon resolvase3e-0755.8
NC_012918:1174412:118527311852731185842570Geobacter sp. M21 chromosome, complete genomeresolvase3e-0755.8
NC_014551:3864127:387451738745173875092576Bacillus amyloliquefaciens DSM 7, complete genomeTransposon Tn1546 resolvase3e-0755.8
NC_014551:2057971:207275120727512073326576Bacillus amyloliquefaciens DSM 7, complete genomeTransposon Tn1546 resolvase3e-0755.8
NC_017190:2002718:201751320175132018088576Bacillus amyloliquefaciens LL3 chromosome, complete genometransposon resolvase3e-0755.8
NC_017190:3879148:388953838895383890113576Bacillus amyloliquefaciens LL3 chromosome, complete genometransposon resolvase3e-0755.8
NC_014973:1941500:194952219495221950079558Geobacter sp. M18 chromosome, complete genomeResolvase domain-containing protein3e-0755.5
NC_013198:394000:439988439988440638651Lactobacillus rhamnosus GG, complete genomeResolvase, N-terminal / helix-turn-helix region3e-0755.5
NC_016749:1914481:194318419431841943768585Streptococcus macedonicus ACA-DC 198, complete genomeResolvase4e-0755.5
NC_016938:193000:195050195050195646597Melissococcus plutonius DAT561 chromosome 1, complete genomeDNA-invertase8e-0754.3
NC_010181:31749:371613716137703543Bacillus weihenstephanensis KBAB4 plasmid pBWB402, completeResolvase domain8e-0754.3
NC_009956:88354:971909719097789600Dinoroseobacter shibae DFL 12 plasmid pDSHI02, complete sequenceresolvase domain-containing protein7e-0754.3
NC_013862:27991:326423264233361720Allochromatium vinosum DSM 180 plasmid pALVIN02, complete sequenceResolvase domain protein1e-0653.9
NC_007274:72979:892548925489865612Pseudomonas syringae pv. phaseolicola 1448A large plasmid, completeDNA invertase1e-0653.5
NC_008341:29038:398433984340400558Nitrosomonas eutropha C91 plasmid1, complete sequenceResolvase, N-terminal domain2e-0653.1
NC_008344:1364142:137394513739451374502558Nitrosomonas eutropha C91, complete genomeResolvase, N-terminal domain2e-0653.1
NC_003384:109036:122365122365122922558Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmidresolvase2e-0653.1
NC_015740:1291739:129359212935921294155564Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeTnAtcArs resolvase2e-0653.1
NC_011663:2813033:281303328130332813593561Shewanella baltica OS223 chromosome, complete genomeresolvase domain-containing protein2e-0653.1
NC_009140:121107:124082124082124699618Salmonella enterica enterica sv Newport str. SL254, complete2e-0653.1
NC_013967:1687825:169590916959091696406498Haloferax volcanii DS2 chromosome, complete genomeputative resolvase2e-0652.8
NC_012752:1:673267327292561Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) plasmidputative resolvase HDEF_p00072e-0652.8
NC_009445:6621996:665476866547686655373606Bradyrhizobium sp. ORS 278 chromosome, complete genometransposon Tn21 resolvase2e-0652.8
NC_008786:1553833:156447815644781565035558Verminephrobacter eiseniae EF01-2, complete genomeResolvase, N-terminal domain4e-0652
NC_011777:161505:165657165657166208552Bacillus cereus AH820 plasmid pAH820_272, complete sequenceresolvase4e-0651.6
NC_010002:2293670:230093123009312301503573Delftia acidovorans SPH-1, complete genomeResolvase domain5e-0651.6
NC_017986:1862408:187575318757531876328576Pseudomonas putida ND6 chromosome, complete genomeputative DNA invertase5e-0651.6
NC_014828:501342:515018515018515584567Ethanoligenens harbinense YUAN-3 chromosome, complete genomeResolvase domain7e-0651.2
NC_014828:107802:113308113308113874567Ethanoligenens harbinense YUAN-3 chromosome, complete genomeResolvase domain7e-0651.2
NC_011283:2836000:289252528925252893121597Klebsiella pneumoniae 342 chromosome, complete genomeDNA-invertase hin7e-0651.2
NC_002678:3210751:322303432230343223579546Mesorhizobium loti MAFF303099, complete genomeDNA invertase gene, RlgA7e-0651.2
NC_009092:4585784:459390045939004594484585Shewanella loihica PV-4, complete genomeResolvase, N-terminal domain6e-0651.2
NC_015853:1:101731017310730558Acidithiobacillus caldus SM-1 plasmid pLAtc2, complete sequencerecombinase6e-0651.2
NC_013791:875224:877866877866878429564Bacillus pseudofirmus OF4 chromosome, complete genomeresolvase8e-0650.8
NC_014824:263491:275110275110275685576Ruminococcus albus 7 plasmid pRUMAL01, complete sequenceResolvase domain8e-0650.8