Pre_GI: BLASTP Hits

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Query: NC_004741:2526421:2539758 Shigella flexneri 2a str. 2457T, complete genome

Start: 2539758, End: 2540843, Length: 1086

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:2586171:2599264259926426006371374Shigella flexneri 2002017 chromosome, complete genomeEthanolamine utilization protein EutA0681
NC_008258:2542863:2557439255743925588121374Shigella flexneri 5 str. 8401, complete genomehypothetical protein0681
NC_004337:2548288:2561625256162525629981374Shigella flexneri 2a str. 301, complete genomehypothetical protein0681
NC_010468:1343228:1345855134585513472581404Escherichia coli ATCC 8739, complete genomeEthanolamine utilisation EutA0667
NC_013192:63111:7270572705741351431Leptotrichia buccalis DSM 1135, complete genomeEthanolamine utilisation EutA3e-49196
NC_009633:286677:2933982933982948311434Alkaliphilus metalliredigens QYMF chromosome, complete genomereactivating factor for ethanolamine ammonia lyase2e-48193
NC_014654:2277461:2291988229198822934151428Halanaerobium sp. 'sapolanicus' chromosome, complete genomeEthanolamine utilization EutA8e-48191
NC_004557:2289135:2303249230324923046821434Clostridium tetani E88, complete genomeethanolamine utilization protein eutA2e-45183
NC_018515:1663912:1683089168308916845461458Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeethanolamine utilization protein2e-45182
NC_009922:868262:8725718725718740011431Alkaliphilus oremlandii OhILAs, complete genomeEthanolamine utilisation EutA1e-43177
NC_017179:2067015:2073732207373220751651434Clostridium difficile BI1, complete genomereactivating factor for ethanolamine ammonia lyase2e-43176
NC_013315:2059007:2065724206572420671571434Clostridium difficile CD196 chromosome, complete genomereactivating factor for ethanolamine ammonia lyase2e-43176
NC_016584:1998000:2022445202244520238541410Desulfosporosinus orientis DSM 765 chromosome, complete genomeethanolamine utilization protein6e-43174
NC_013517:1055854:1133363113336311347901428Sebaldella termitidis ATCC 33386, complete genomeEthanolamine utilisation EutA6e-42171
NC_009253:1381401:1388978138897813904471470Desulfotomaculum reducens MI-1 chromosome, complete genomereactivating factor for ethanolamine ammonia lyase7e-42171
NC_014376:1586649:1594319159431915957491431Clostridium saccharolyticum WM1 chromosome, complete genomeEthanolamine utilization EutA2e-41169
NC_016584:1714507:1728934172893417303911458Desulfosporosinus orientis DSM 765 chromosome, complete genomeethanolamine utilization protein3e-41169
NC_003366:1091766:1098691109869111001241434Clostridium perfringens str. 13, complete genomeethanolamine utilization protein2e-39163
NC_008261:1048515:1055449105544910568821434Clostridium perfringens ATCC 13124, complete genomeethanolamine utilization protein EutA4e-39162
NC_015275:4493500:4503909450390945053541446Clostridium lentocellum DSM 5427 chromosome, complete genomeEthanolamine utilization EutA2e-38160
NC_014019:3543389:3557182355718235586271446Bacillus megaterium QM B1551 chromosome, complete genomeethanolamine utilization protein EutA2e-38159
NC_014614:284005:2922572922572937021446Clostridium sticklandii, complete genomereactivating factor for ethanolamine ammonia lyase7e-38158
NC_018870:705900:7221167221167235551440Thermacetogenium phaeum DSM 12270 chromosome, complete genomeethanolamine utilization protein EutA1e-37157
NC_012491:5914500:5931927593192759333871461Brevibacillus brevis NBRC 100599, complete genomehypothetical protein1e-36154
NC_004129:6240904:6242210624221062436461437Pseudomonas fluorescens Pf-5, complete genomeethanolamine utilization protein EutA5e-1479