Pre_GI: BLASTP Hits

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Query: NC_004741:2081649:2105618 Shigella flexneri 2a str. 2457T, complete genome

Start: 2105618, End: 2106898, Length: 1281

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:2153083:2177053217705321783331281Shigella flexneri 2002017 chromosome, complete genomeputative galactokinase0885
NC_004337:2098736:2122752212275221240321281Shigella flexneri 2a str. 301, complete genomeputative galactokinase0885
NC_008258:2100646:2124617212461721258971281Shigella flexneri 5 str. 8401, complete genomeputative galactokinase0879
NC_009801:2276131:2300047230004723013271281Escherichia coli E24377A, complete genomecolanic acid biosynthesis protein WcaK0876
NC_011745:2302979:2325804232580423270841281Escherichia coli ED1a chromosome, complete genomeputative pyruvyl transferase0875
NC_002655:2839600:2862718286271828639981281Escherichia coli O157:H7 EDL933, complete genomeputative galactokinase .0872
NC_002695:2769387:2792504279250427937841281Escherichia coli O157:H7 str. Sakai, complete genomeputative galactokinase0872
NC_010468:1775000:1775025177502517763051281Escherichia coli ATCC 8739, complete genomepolysaccharide pyruvyl transferase0872
NC_011742:2093503:2113998211399821152781281Escherichia coli S88 chromosome, complete genomepyruvyl transferase0872
NC_011353:2734222:2757339275733927586191281Escherichia coli O157:H7 str. EC4115 chromosome, complete genomepyruvyl transferase0872
NC_013008:2733203:2756320275632027576001281Escherichia coli O157:H7 str. TW14359 chromosome, complete genomepyruvyl transferase0872
NC_010498:1035406:1036956103695610382361281Escherichia coli SMS-3-5, complete genomecolanic acid biosynthesis protein WcaK0872
NC_011601:2211917:2237391223739122386711281Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomepyruvyl transferase0872
NC_007613:864084:8877318877318890111281Shigella boydii Sb227, complete genomeputative galactokinase0872
CU928160:2155947:2177890217789021791701281Escherichia coli IAI1 chromosome, complete genomeputative pyruvyl transferase0872
NC_011741:2155947:2177890217789021791701281Escherichia coli IAI1 chromosome, complete genomeputative pyruvyl transferase0872
NC_011415:2346474:2372823237282323741031281Escherichia coli SE11 chromosome, complete genomeputative pyruvyl transferase0871
NC_000913:2092559:2115148211514821164281281Escherichia coli K12, complete genomepredicted pyruvyl transferase0871
NC_010473:2183567:2206156220615622074361281Escherichia coli str. K-12 substr. DH10B, complete genomepredicted pyruvyl transferase0871
AC_000091:2096672:2119261211926121205411281Escherichia coli W3110 DNA, complete genomepredicted pyruvyl transferase0871
NC_012759:1983975:2007631200763120089111281Escherichia coli BW2952 chromosome, complete genomeputative pyruvyl transferase0871
CU928145:2324495:2347264234726423485441281Escherichia coli 55989 chromosome, complete genomeputative pyruvyl transferase0870
NC_011748:2324495:2347264234726423485441281Escherichia coli 55989, complete genomeputative pyruvyl transferase0870
NC_008563:2182270:2204285220428522055651281Escherichia coli APEC O1, complete genomecolanic acid biosynthesis protein0868
NC_012947:1720732:1722372172237217236521281Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completepyruvyl transferase0868
NC_012967:2025127:2050355205035520516351281Escherichia coli B str. REL606 chromosome, complete genomeputative pyruvyl transferase0868
NC_011750:1034919:1036470103647010377501281Escherichia coli IAI39 chromosome, complete genomeputative pyruvyl transferase0868
NC_013941:2544569:2573091257309125743711281Escherichia coli O55:H7 str. CB9615 chromosome, complete genomepyruvyl transferase WcaK0867
AP010958:2504072:2527818252781825290981281Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted pyruvyl transferase WcaK0867
NC_013353:2504072:2527818252781825290981281Escherichia coli O103:H2 str. 12009, complete genomepyruvyl transferase WcaK0867
CP002516:1846492:1849738184973818510181281Escherichia coli KO11, complete genomeputative pyruvyl transferase0867
CP002185:2233732:2254837225483722561171281Escherichia coli W, complete genomegalactokinase0867
NC_016902:1846492:1849738184973818510181281Escherichia coli KO11FL chromosome, complete genomeputative pyruvyl transferase0867
NC_011751:2395882:2415844241584424171241281Escherichia coli UMN026 chromosome, complete genomeputative pyruvyl transferase0866
NC_004431:2383901:2404378240437824056581281Escherichia coli CFT073, complete genomeColanic acid biosynthesis protein wcaK0865
NC_007946:2231872:2254189225418922554691281Escherichia coli UTI89, complete genomeputative galactokinase0864
NC_010658:1090104:1091858109185810931381281Shigella boydii CDC 3083-94, complete genomecolanic acid biosynthesis protein WcaK0864
NC_008253:2134110:2154586215458621558661281Escherichia coli 536, complete genomecolanic acid biosynthesis protein WcaK0862
NC_013361:2848949:2870778287077828720581281Escherichia coli O26:H11 str. 11368 chromosome, complete genomepyruvyl transferase0856
NC_013716:2255102:2277792227779222790721281Citrobacter rodentium ICC168, complete genomeputative colanic acid biosynthesis pyruvyl transferase0809
NC_009792:714953:7179457179457192251281Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein0804
NC_015761:2062345:2082867208286720841891323Salmonella bongori NCTC 12419, complete genomeextracellular polysaccharide biosynthesis protein0803
NC_015968:2975351:2997223299722329985031281Enterobacter asburiae LF7a chromosome, complete genomepolysaccharide pyruvyl transferase0786
NC_014121:3399685:3428058342805834293381281Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative pyruvyl transferase0778
NC_016514:3048883:3072979307297930742591281Enterobacter cloacae EcWSU1 chromosome, complete genomecolanic acid biosynthesis protein wcaK0778
NC_009436:2836847:2859356285935628606361281Enterobacter sp. 638, complete genomepyruvyl transferase0774
NC_020063:1659795:1661289166128916625691281Enterobacteriaceae bacterium strain FGI 57, complete genomecolanic acid biosynthesis pyruvyl transferase WcaK0765
NC_014618:1752434:1755346175534617566261281Enterobacter cloacae SCF1 chromosome, complete genomecolanic acid biosynthesis pyruvyl transferase0743
NC_013282:2827757:2851678285167828529581281Cronobacter turicensis, complete genomeColanic acid biosynthesis protein wcaK0736
NC_009778:1141716:1143274114327411445541281Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein0735
NC_020260:1184174:1185732118573211870121281Cronobacter sakazakii Sp291, complete genomecolanic acid biosynthesis protein0735
NC_003197:2152994:2182659218265921839391281Salmonella typhimurium LT2, complete genomeputative galactokinase2e-175615
NC_016810:2150709:2180374218037421816541281Salmonella enterica subsp. enterica serovar Typhimurium strcolanic acid biosynthesis protein2e-175615
NC_016856:2204546:2234211223421122354911281Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative pyruvyl transferase2e-175615
NC_016857:2150709:2180374218037421816541281Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative pyruvyl transferase2e-175615
NC_016860:2148535:2178200217820021794801281Salmonella enterica subsp. enterica serovar Typhimurium strputative pyruvyl transferase2e-175615
NC_016863:2152739:2182404218240421836841281Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative pyruvyl transferase2e-175615
NC_017046:2150072:2179737217973721810171281Salmonella enterica subsp. enterica serovar Typhimurium str. 798colanic acid biosynthesis protein2e-175615
NC_011274:2147427:2178303217830321795831281Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91pyruvyl transferase4e-175614
NC_011205:2283438:2314312231431223155921281Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853pyruvyl transferase3e-175614
NC_011294:2156425:2187295218729521885751281Salmonella enterica subsp. enterica serovar Enteritidis strpyruvyl transferase3e-175614
NC_016831:854973:8549738549738562531281Salmonella enterica subsp. enterica serovar Gallinarum/pullorumcolanic acid biosynthesis protein3e-175614
NC_011149:2110861:2140525214052521418051281Salmonella enterica subsp. enterica serovar Agona str. SL483,colanic acid biosynthesis protein WcaK3e-175614
NC_011094:2172271:2204202220420222054821281Salmonella enterica subsp. enterica serovar Schwarzengrund strpyruvyl transferase3e-175614
NC_006905:2175361:2195163219516321964431281Salmonella enterica subsp. enterica serovar Choleraesuis strputative galactokinase in colanic acid gene cluster8e-175613
NC_011080:2161696:2194099219409921953791281Salmonella enterica subsp. enterica serovar Newport str. SL254,colanic acid biosynthesis protein WcaK8e-175613
NC_010102:861860:8618608618608631401281Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-174612
NC_012125:1693774:1696770169677016980501281Salmonella enterica subsp. enterica serovar Paratyphi C strainpyruvyl transferase1e-174612
NC_011083:2200613:2230278223027822315581281Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,colanic acid biosynthesis protein WcaK3e-174611
NC_006511:854785:8547858547858560651281Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC1e-173609
NC_013956:2749685:2776297277629727775591263Pantoea ananatis LMG 20103 chromosome, complete genomeAmsJ2e-136486
NC_016816:1676460:1678821167882116800831263Pantoea ananatis LMG 5342, complete genomeextracellular polysaccharide pyruvyl transferase2e-136486
NC_014562:2049921:2073175207317520744371263Pantoea vagans C9-1 chromosome, complete genomeExtracellular polysaccharide pyruvyl transferase wceJ3e-134478
NC_014837:2803447:2824954282495428262161263Pantoea sp. At-9b chromosome, complete genomepolysaccharide pyruvyl transferase2e-132472
NC_010694:1502019:1504389150438915056361248Erwinia tasmaniensis, complete genomeExopolysaccharide biosynthesis protein5e-132471
NC_013961:2260250:2282962228296222842091248Erwinia amylovora, complete genomeExopolysaccharide biosynthesis protein amsJ4e-132471
NC_013971:2297777:2320489232048923217361248Erwinia amylovora ATCC 49946 chromosome, complete genomeamylovoran biosynthesis protein4e-132471
NC_012214:1588573:1602919160291916041661248Erwinia pyrifoliae Ep1/96, complete genomeExopolysaccharide biosynthesis protein WcaK (synonym for CpsJ; similar to AmsJ)1e-131470
NC_007712:1601499:1608707160870716098281122Sodalis glossinidius str. 'morsitans', complete genomeamylovoran biosynthesis protein AmsJ7e-118424
NC_003198:2109775:2140648214064821419261279Salmonella enterica subsp. enterica serovar Typhi str. CT18,1e-24114
NC_012032:1878854:1888791188879118900501260Chloroflexus sp. Y-400-fl, complete genomepolysaccharide pyruvyl transferase1e-22107
NC_017079:732834:7438147438147451121299Caldilinea aerophila DSM 14535 = NBRC 104270, complete genomepolysaccharide pyruvyl transferase family protein1e-1584.7
NC_015216:808000:8265008265008277381239Methanobacterium sp. AL-21 chromosome, complete genomepolysaccharide pyruvyl transferase1e-1584.7
NC_013929:2375613:2453307245330724545181212Streptomyces scabiei 87.22 chromosome, complete genomepyruvyl-transferase4e-1479.7
NC_009051:930758:9386619386619398841224Methanoculleus marisnigri JR1, complete genomepolysaccharide pyruvyl transferase2e-1067.4
NC_013223:724394:7417867417867430031218Desulfohalobium retbaense DSM 5692, complete genomehypothetical protein5e-1066.2
NC_015164:325212:3318563318563330821227Bacteroides salanitronis DSM 18170 chromosome, complete genomepolysaccharide pyruvyl transferase6e-1065.9
NC_012522:5952307:5964520596452059656351116Rhodococcus opacus B4, complete genomeputative polysaccharide biosynthesis protein9e-0961.6
NC_008553:1038344:1045289104528910465451257Methanosaeta thermophila PT, complete genomepolysaccharide pyruvyl transferase8e-0858.5
NC_015859:370500:3833503833503844381089Corynebacterium variabile DSM 44702 chromosome, complete genomehypothetical protein2e-0757.8
NC_012793:3096095:3138286313828631393981113Geobacillus sp. WCH70, complete genomepolysaccharide pyruvyl transferase4e-0756.2
NC_016943:336550:3489073489073502891383Blastococcus saxobsidens DD2, complete genomeputative pyruvyl transferase2e-0653.9
NC_010718:2513917:2540865254086525420671203Natranaerobius thermophilus JW/NM-WN-LF, complete genomepolysaccharide pyruvyl transferase8e-0652