Pre_GI: BLASTP Hits

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Query: NC_004632:28470:42922 Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000B,

Start: 42922, End: 47595, Length: 4674

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012751:942315:9547339547339572192487Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeDNA primase TraC1e-81305
NC_013422:1755875:177745917774591778379921Halothiobacillus neapolitanus c2, complete genomehypothetical protein1e-44183
NC_014801:1:1675416754179801227Campylobacter jejuni subsp. jejuni ICDCCJ07001 plasmid pTet,cpp224e-34148
NC_015221:12389:3452534525374162892Nitrosomonas sp. AL212 plasmid pNAL21202, complete sequencehypothetical protein2e-33145
NC_003295:2669480:2689399268939926919452547Ralstonia solanacearum GMI1000, complete genomehypothetical protein4e-29131
NC_014664:1614568:1614568161456816171172550Rhodomicrobium vannielii ATCC 17100 chromosome, complete genomehypothetical protein2e-25119
NC_017506:2089769:209501420950142095910897Marinobacter adhaerens HP15 chromosome, complete genomevirulence-associated E family protein4e-23111
NC_004578:3849835:3854392385439238566112220Pseudomonas syringae pv. tomato str. DC3000, complete genomeDNA primase domain protein4e-23111
NC_006351:520500:5228525228525257192868Burkholderia pseudomallei K96243 chromosome 2, complete sequencehypothetical protein1e-22110
NC_016830:5031819:5038640503864050408592220Pseudomonas fluorescens F113 chromosome, complete genomevirulence-associated e family protein2e-22109
NC_007650:2429307:2455275245527524581422868Burkholderia thailandensis E264 chromosome II, complete sequenceDNA primase1e-21106
NC_004129:2201780:2215930221593022181672238Pseudomonas fluorescens Pf-5, complete genomeDNA primase domain protein4e-21104
NC_012724:3222415:3224293322429332271692877Burkholderia glumae BGR1 chromosome 1, complete genomeInner membrane protein7e-21104
NC_008060:1945597:1947208194720819500842877Burkholderia cenocepacia AU 1054 chromosome 1, complete sequenceinner membrane protein6e-20101
NC_008542:2631138:2632749263274926356252877Burkholderia cenocepacia HI2424 chromosome 1, complete sequenceinner membrane protein6e-20101
NC_007434:1322500:1346373134637313492342862Burkholderia pseudomallei 1710b chromosome I, complete sequenceinner membrane protein1e-19100
NC_010508:2776283:2778117277811727809782862Burkholderia cenocepacia MC0-3 chromosome 1, complete sequencePrimase 21e-19100
NC_002947:3404000:3421840342184034240502211Pseudomonas putida KT2440, complete genomepyocin R2_PP, traC domain protein9e-20100
NC_009256:458649:4586494586494615252877Burkholderia vietnamiensis G4 chromosome 1, complete sequenceinner membrane protein9e-20100
NC_009074:94000:9434694346971982853Burkholderia pseudomallei 668 chromosome I, complete sequencehypothetical protein9e-20100
NC_017986:5509569:5526345552634555285552211Pseudomonas putida ND6 chromosome, complete genomeTraC domain-containing protein7e-20100
NC_009434:1580205:159532015953201596195876Pseudomonas stutzeri A1501, complete genomeTOPRIM domain-containing protein3e-1999
NC_012796:1600600:1627250162725016291331884Desulfovibrio magneticus RS-1, complete genomehypothetical protein8e-1997.4
NC_016026:2170500:218366521836652184543879Micavibrio aeruginosavorus ARL-13 chromosome, complete genomehypothetical protein2e-1896.3
NC_009076:106807:1102561102561131082853Burkholderia pseudomallei 1106a chromosome I, complete sequencehypothetical protein1e-1793.6
NC_009256:2725836:2727734272773427301272394Burkholderia vietnamiensis G4 chromosome 1, complete sequenceTOPRIM domain-containing protein4e-1791.7
NC_015136:2021799:2045288204528820481372850Burkholderia sp. CCGE1001 chromosome 1, complete sequenceToprim sub domain-containing protein6e-1790.9
NC_008390:2643653:2653394265339426557872394Burkholderia cepacia AMMD chromosome 1, complete sequenceTOPRIM domain protein4e-1688.2
NC_017033:2081206:210437521043752105307933Frateuria aurantia DSM 6220 chromosome, complete genomehypothetical protein3e-1585.5
NC_004757:267165:267165267165268085921Nitrosomonas europaea ATCC 19718, complete genomeToprim domain7e-1584.3
NC_013592:4295449:4298421429842143004662046Dickeya dadantii Ech586, complete genomeP4 alpha zinc-binding domain protein2e-1483.2
NC_013892:671000:6938526938526965482697Xenorhabdus bovienii SS-2004 chromosome, complete genomeprophage primase2e-1482.8
NC_014500:443874:4601454601454621902046Dickeya dadantii 3937 chromosome, complete genomeDNA primase7e-1480.9
NC_012912:4194821:4195622419562241976672046Dickeya zeae Ech1591, complete genomeP4 alpha zinc-binding domain protein2e-1379.7
NC_013592:2703327:2707294270729427099932700Dickeya dadantii Ech586, complete genomeprotein of unknown function DUF9272e-1379.3
NC_012880:4117376:4117865411786541199102046Dickeya dadantii Ech703, complete genomeP4 alpha zinc-binding domain protein3e-1379
NC_013892:1272448:1299079129907913018532775Xenorhabdus bovienii SS-2004 chromosome, complete genomeprophage primase7e-1274.3
NC_008061:2106848:2107936210793621097831848Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencehypothetical protein2e-1173.2
NC_014972:480355:4964064964064988622457Desulfobulbus propionicus DSM 2032 chromosome, complete genomehypothetical protein2e-1172.8
NC_015856:3912195:3940210394021039427262517Collimonas fungivorans Ter331 chromosome, complete genomehypothetical protein2e-1172.8
NC_015381:992401:1007868100786810106602793Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein3e-1172.4
NC_012880:2778795:2782217278221727848532637Dickeya dadantii Ech703, complete genomeprotein of unknown function DUF9273e-1172.4
NC_011080:4703266:4718963471896347212932331Salmonella enterica subsp. enterica serovar Newport str. SL254,bacteriophage P4 DNA primase3e-1172.4
NC_009778:2951207:2967702296770229701372436Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein5e-1171.6
NC_012917:3684840:3686089368608936884162328Pectobacterium carotovorum subsp. carotovorum PC1, complete genomephage/plasmid primase, P4 family5e-1171.6
NC_015968:3301958:3325863332586333285352673Enterobacter asburiae LF7a chromosome, complete genomehypothetical protein4e-1171.6
NC_020211:103371:1041651041651064982334Serratia marcescens WW4, complete genomeP4-specific DNA primase6e-1171.2
NC_013722:218847:2332592332592357272469Xanthomonas albilineans, complete genomehypothetical protein6e-1171.2
NC_014500:3744705:3757707375770737603432637Dickeya dadantii 3937 chromosome, complete genomeDNA primase traC7e-1171.2
NC_013956:4326388:4327056432705643297282673Pantoea ananatis LMG 20103 chromosome, complete genomeAlpha7e-1171.2
NC_020211:996497:1011327101132710136752349Serratia marcescens WW4, complete genomephage/plasmid primase, P4 family8e-1170.9
NC_002655:301940:3195023195023218922391Escherichia coli O157:H7 EDL933, complete genomealpha replication protein of prophage CP-933I1e-1070.5
NC_013941:338121:3604753604753628652391Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeAlpha replication protein of prophage CP-933I1e-1070.5
NC_002695:301939:3195583195583218912334Escherichia coli O157:H7 str. Sakai, complete genomeputative DNA primase1e-1070.5
NC_011353:305820:3234383234383257712334Escherichia coli O157:H7 str. EC4115 chromosome, complete genomenucleoside triphosphatase, D5 family1e-1070.5
NC_013008:306953:3247503247503270832334Escherichia coli O157:H7 str. TW14359 chromosome, complete genomealpha replication protein of prophage CP-933I1e-1070.5
NC_011083:2542876:2556453255645325591402688Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,zinc-binding domain of primase-helicase family1e-1070.5
NC_010515:1124298:1125386112538611272331848Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencePrimase 21e-1070.1
NC_011740:810411:8262408262408289122673Escherichia fergusonii ATCC 35469, complete genomePutative inner membrane protein (modular protein) from phage origin1e-1070.1
NC_009254:365812:3782273782273797501524Burkholderia vietnamiensis G4 chromosome 3, complete sequenceDNA primase, DNA transfer TraO-like protein1e-1070.1
CP002797:2472908:2472908247290824755952688Escherichia coli NA114, complete genomeputative phage protein1e-1070.1
NC_011001:372185:3915163915163933631848Burkholderia cenocepacia J2315 chromosome 2, complete sequencehypothetical protein1e-1070.1
NC_011094:380428:3832303832303859022673Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein1e-1070.1
NC_015224:3291736:3306358330635833090422685Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,Zinc-binding domain of primase-helicase family2e-1069.7
NC_014500:2019113:2039592203959220423602769Dickeya dadantii 3937 chromosome, complete genomeDNA primase traC2e-1069.3
NC_014121:1101093:1113609111360911162962688Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completezinc-binding domain of primase-helicase family protein3e-1068.9
NC_015761:2373967:2373967237396723770893123Salmonella bongori NCTC 12419, complete genomebacteriophage DNA primase4e-1068.6
NC_013892:3278647:3281299328129932824681170Xenorhabdus bovienii SS-2004 chromosome, complete genomeprophage primase (fragment)4e-1068.6
NC_009778:567000:5928395928395951542316Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein6e-1068.2
NC_009436:3367194:3382164338216433844972334Enterobacter sp. 638, complete genomeplasmid and phage DNA primase2e-0966.2
NC_013508:3593000:3604038360403836063652328Edwardsiella tarda EIB202, complete genomehypothetical protein2e-0965.9
NC_010694:2716348:2731726273172627345542829Erwinia tasmaniensis, complete genomePutative prophage primase2e-0965.9
NC_007086:3334000:3334900333490033384633564Xanthomonas campestris pv. campestris str. 8004, complete genomehypothetical protein4e-0965.1
NC_003902:1680414:1703794170379417073573564Xanthomonas campestris pv. campestris str. ATCC 33913, completehypothetical protein4e-0965.1
NC_010688:3229820:3232161323216132357243564Xanthomonas campestris pv. campestris, complete genomehypothetical protein4e-0965.1
NC_011147:4460726:4463371446337144657042334Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein6e-0964.7
NC_006511:4465495:4468141446814144704742334Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein6e-0964.7
NC_015381:1173603:1192541119254111952732733Burkholderia gladioli BSR3 chromosome 1, complete sequencepyocin R2_PP, TraC domain-containing protein7e-0964.3
NC_021066:5342127:5355667535566753580092343Raoultella ornithinolytica B6, complete genomeZinc binding domain / DNA primase8e-0964.3
NC_012917:833721:8345098345098368362328Pectobacterium carotovorum subsp. carotovorum PC1, complete genomephage/plasmid primase, P4 family9e-0963.9
NC_011080:2870428:2886088288608828884212334Salmonella enterica subsp. enterica serovar Newport str. SL254,bacteriophage P4 DNA primase1e-0863.5
NC_009007:57804:7601176011793463336Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequenceTraI2e-0863.2
NC_017046:2896651:2896651289665128989842334Salmonella enterica subsp. enterica serovar Typhimurium str. 798bacteriophage P4 DNA primase3e-0862.4
NC_016857:2871689:2897909289790929002422334Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74bacteriophage P4 DNA primase3e-0862.4
NC_016810:2871689:2897858289785829002422385Salmonella enterica subsp. enterica serovar Typhimurium strbacteriophage P4 DNA primase3e-0862
NC_009381:2939782:295467529546752955634960Yersinia pestis Pestoides F chromosome, complete genomeprophage DNA primase6e-0861.2
NC_010468:1130000:1146686114668611490192334Escherichia coli ATCC 8739, complete genomephage/plasmid primase, P4 family7e-0861.2
NC_008390:2058500:2059577205957720620842508Burkholderia cepacia AMMD chromosome 1, complete sequencevirulence-associated E family protein8e-0860.8
NC_016845:575123:5911475911475934802334Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,nucleoside triphosphatase, D5 family1e-0760.5
NC_013956:3273340:3273675327367532759992325Pantoea ananatis LMG 20103 chromosome, complete genomeAlpha1e-0760.5
NC_014306:4376012:4407434440743444097642331Erwinia billingiae Eb661, complete genomePlasmid and phage DNA primase1e-0760.1
NC_010498:4072681:4089863408986340921962334Escherichia coli SMS-3-5, complete genomeD5 family nucleoside triphosphatase2e-0759.7
NC_003198:4676536:4692212469221246945452334Salmonella enterica subsp. enterica serovar Typhi str. CT18,Bacteriophage P4 DNA primase2e-0759.7
NC_011740:448000:4485024485024508352334Escherichia fergusonii ATCC 35469, complete genomephage DNA primase2e-0759.3
NC_014029:1283500:128602212860221286777756Yersinia pestis Z176003 chromosome, complete genomeputative prophage DNA primase3e-0758.9
NC_017154:1225500:122811512281151228870756Yersinia pestis D106004 chromosome, complete genomeputative prophage DNA primase3e-0758.9
NC_017160:1507500:152274115227411523496756Yersinia pestis D182038 chromosome, complete genomeputative prophage DNA primase3e-0758.9
NC_003143:1233128:123682512368251237784960Yersinia pestis CO92, complete genomeputative prophage DNA primase4e-0758.5
NC_008149:3251196:326609032660903267049960Yersinia pestis Nepal516, complete genomeprophage DNA primase4e-0758.5
NC_008150:650899:653561653561654520960Yersinia pestis Antiqua, complete genomeputative prophage DNA primase4e-0758.5
NC_010159:1417993:142097714209771421936960Yersinia pestis Angola, complete genome4e-0758.5
NC_017168:4155143:415884141588414159800960Yersinia pestis A1122 chromosome, complete genomehypothetical protein4e-0758.5
NC_017265:1136000:113815511381551139114960Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative prophage DNA primase4e-0758.5
NC_005810:1130251:114511511451151146104990Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein4e-0758.5
NC_004088:3382148:339701133970113398000990Yersinia pestis KIM, complete genomehypothetical protein4e-0758.5
NC_007613:4217557:4217557421755742198902334Shigella boydii Sb227, complete genomeputative DNA primase5e-0758.2
NC_010102:2862178:2865648286564828679812334Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein5e-0758.2
NC_010688:3030873:3030873303087330343973525Xanthomonas campestris pv. campestris, complete genomehypothetical protein6e-0758.2
NC_015061:1251905:1265618126561812682932676Rahnella sp. Y9602 chromosome, complete genomehypothetical protein8e-0757.8
NC_009254:365812:3763083763083781701863Burkholderia vietnamiensis G4 chromosome 3, complete sequenceDNA replication primase1e-0657
NC_008314:2686851:2692615269261526946212007Ralstonia eutropha H16 chromosome 2, complete sequenceputative helicase1e-0656.6
NC_012724:3100430:3107328310732831098292502Burkholderia glumae BGR1 chromosome 1, complete genomehypothetical protein2e-0656.2
NC_015381:3457784:347948334794833480445963Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein2e-0655.8
NC_009138:2242470:2263968226396822715397572Herminiimonas arsenicoxydans, complete genomeconserved hypothetical protein; unknown prophage; (partial)3e-0655.5
NC_014306:4901390:4936659493665949389892331Erwinia billingiae Eb661, complete genomePhage/plasmid primase, P4 family8e-0654.3
NC_014170:57954:6039860398622211824Xenorhabdus nematophila ATCC 19061 plasmid XNC1_p, completehypothetical protein9e-0653.9