Pre_GI: BLASTP Hits

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Query: NC_004632:28470:42592 Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000B,

Start: 42592, End: 42879, Length: 288

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012751:942315:954455954455954715261Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeTraK conjugal transfer protein6e-1682.8
NC_012751:1296877:130647813064781306738261Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeTraK conjugal transfer protein9e-1682