Pre_GI: BLASTP Hits

Some Help

Query: NC_004632:28470:32917 Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000B,

Start: 32917, End: 33429, Length: 513

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007275:1:149981499815699702Pseudomonas syringae pv. phaseolicola 1448A small plasmid, completetranscriptional regulator, GntR family1e-70265
NC_006510:2044347:206127920612792062007729Geobacillus kaustophilus HTA426, complete genometranscriptional regulator1e-1066.2
NC_013526:105195:119507119507120259753Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeGntR domain protein4e-1063.9
NC_015594:332432:349319349319350053735Sphingobium chlorophenolicum L-1 chromosome chromosome 2, completeGntR domain-containing protein5e-1063.9
NC_017033:1089579:110918911091891109923735Frateuria aurantia DSM 6220 chromosome, complete genometranscriptional regulator5e-1063.5
NC_016023:755237:755237755237755947711Bacillus coagulans 36D1 chromosome, complete genomeGntR domain-containing protein7e-1063.2
NC_008593:640000:651050651050651724675Clostridium novyi NT, complete genometranscriptional regulator, GntR family, putative2e-0961.6
NC_004193:2921103:292578529257852926489705Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator4e-0960.8
NC_010337:2339056:234209423420942342804711Heliobacterium modesticaldum Ice1, complete genometranscriptional regulator, GntR family2e-0858.9
NC_015733:3923800:392690539269053927591687Pseudomonas putida S16 chromosome, complete genomeGntR family transcriptional regulator1e-0858.9
NC_010676:2720068:273288227328822733655774Burkholderia phytofirmans PsJN chromosome 2, complete sequenceGntR domain protein2e-0858.5
NC_009667:1341000:136099613609961361676681Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequenceGntR family transcriptional regulator4e-0857.8
NC_016048:3667890:367938436793843680112729Oscillibacter valericigenes Sjm18-20, complete genomeputative GntR family transcriptional regulator6e-0857
NC_015064:1355065:137103413710341371891858Acidobacterium sp. MP5ACTX9 chromosome, complete genomeGntR domain protein9e-0856.2
NC_010676:304405:323839323839324528690Burkholderia phytofirmans PsJN chromosome 2, complete sequenceGntR domain protein1e-0755.8
NC_004193:375416:394239394239394949711Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator1e-0755.8
NC_014394:93344:110272110272110943672Gallionella capsiferriformans ES-2 chromosome, complete genometranscriptional regulator, GntR family1e-0755.8
NC_016782:2088858:208885820888582089556699Corynebacterium diphtheriae 241 chromosome, complete genomeputative transcriptional regulator2e-0755.1
NC_016800:2127200:212885421288542129552699Corynebacterium diphtheriae BH8 chromosome, complete genomeputative transcriptional regulator2e-0755.1
NC_015167:313506:317055317055317759705Cellulophaga lytica DSM 7489 chromosome, complete genomeGntR domain-containing protein2e-0754.7
NC_008314:2744553:277746027774602778158699Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator, GntR-family3e-0754.7
NC_016582:11820671:118416551184165511842452798Streptomyces bingchenggensis BCW-1 chromosome, complete genomeGntR family transcriptional regulator4e-0754.3
NC_013939:1625491:163746116374611638132672Deferribacter desulfuricans SSM1, complete genomeGntR family transcriptional regulator4e-0754.3
NC_008786:3045770:3061342306134230624811140Verminephrobacter eiseniae EF01-2, complete genomeGntR domain protein5e-0753.9
NC_009922:315870:338735338735339421687Alkaliphilus oremlandii OhILAs, complete genometranscriptional regulator, GntR family5e-0753.5
NC_007644:1352794:135436113543611355110750Moorella thermoacetica ATCC 39073, complete genomeregulatory protein GntR, HTH5e-0753.5
NC_011898:1558208:156763615676361568325690Clostridium cellulolyticum H10, complete genomeGntR domain protein8e-0753.1
NC_007912:1231436:123868412386841239451768Saccharophagus degradans 2-40, complete genome1,4-alpha-glucan branching enzyme1e-0652.8
NC_015856:268034:293167293167293937771Collimonas fungivorans Ter331 chromosome, complete genomeputative D-glucarate or D-galactorate regulator, GntR family1e-0652.4
NC_011274:1544653:157101315710131571732720Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91GntR family regulatory protein2e-0652
NC_016582:9664000:967760596776059678303699Streptomyces bingchenggensis BCW-1 chromosome, complete genomeGntR family transcriptional regulator3e-0651.2
NC_003305:1743939:177186217718621772575714Agrobacterium tumefaciens str. C58 chromosome linear, completetranscriptional regulator, GntR family3e-0651.2
NC_011751:3453683:349481534948153495549735Escherichia coli UMN026 chromosome, complete genometranscriptional regulator4e-0650.8
NC_015556:4118304:413267941326794133422744Pseudomonas fulva 12-X chromosome, complete genomeGntR domain protein4e-0650.8
NC_011745:4862218:487607548760754876809735Escherichia coli ED1a chromosome, complete genomeTranscriptional regulator5e-0650.4
NC_014963:3175912:317591231759123176580669Terriglobus saanensis SP1PR4 chromosome, complete genomeGntR family transcriptional regulator9e-0649.7
NC_014323:4619344:464992446499244650634711Herbaspirillum seropedicae SmR1 chromosome, complete genometranscription regulator protein1e-0549.7