Pre_GI: BLASTP Hits

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Query: NC_004632:28470:30760 Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000B,

Start: 30760, End: 30993, Length: 234

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007275:1:149981499815699702Pseudomonas syringae pv. phaseolicola 1448A small plasmid, completetranscriptional regulator, GntR family6e-27119
NC_016582:9664000:967760596776059678303699Streptomyces bingchenggensis BCW-1 chromosome, complete genomeGntR family transcriptional regulator6e-0856.2
NC_002678:7004370:703210170321017032844744Mesorhizobium loti MAFF303099, complete genometranscriptional regulator2e-0754.7
NC_003888:4314389:432757643275764328355780Streptomyces coelicolor A3(2), complete genomegntR-family transcriptional regulator2e-0651.2
NC_013929:5927935:594000159400015940780780Streptomyces scabiei 87.22 chromosome, complete genomeGntR family transcriptional regulator2e-0651.2
NC_009328:1903291:1904069190406919051631095Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeprotein AraR7e-0649.3
NC_007974:2097334:213104121310412131952912Ralstonia metallidurans CH34 chromosome 2, complete sequenceregulatory protein GntR, HTH7e-0649.3
NC_010676:304405:323839323839324528690Burkholderia phytofirmans PsJN chromosome 2, complete sequenceGntR domain protein8e-0649.3