Pre_GI: BLASTP Hits

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Query: NC_004632:28470:28470 Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000B,

Start: 28470, End: 30425, Length: 1956

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012751:1296877:1296877129687712987691893Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeMobA relaxase/mobilization protein1e-115417
NC_004578:1190000:1201509120150912039262418Pseudomonas syringae pv. tomato str. DC3000, complete genomerelaxase/mobilization nuclease domain protein4e-42173
NC_002128:35000:5171551715536881974Escherichia coli O157:H7 str. Sakai plasmid pO157, completeNikB1e-35152
NC_007414:56508:7429074290762631974Escherichia coli O157:H7 EDL933 plasmid pO157, complete sequenceputative nickase1e-35152
NC_012751:1988280:199409319940931994815723Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), complete6e-28126
NC_012751:1988280:199015319901531990875723Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), complete6e-28126
NC_006350:3865584:3880126388012638821111986Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative plasmid conjugal transfer protein3e-22107
NC_006371:1743982:1771395177139517731611767Photobacterium profundum SS9 chromosome 2, complete sequencehypothetical protein1e-1999
NC_009663:2531876:2538536253853625401431608Sulfurovum sp. NBC37-1, complete genomeDNA relaxase TraI3e-1997.4
NC_014153:2125551:2146609214660921487442136Thiomonas intermedia K12 chromosome, complete genomeRelaxase/mobilization nuclease family protein5e-1996.7
NC_016745:2028424:2042661204266120444391779Oceanimonas sp. GK1 chromosome, complete genomeconjugal transfer relaxase TraI5e-1893.6
NC_008341:29038:5017150171522192049Nitrosomonas eutropha C91 plasmid1, complete sequenceRelaxase/mobilization nuclease family protein1e-1792.4
NC_008347:2515921:253534325353432536254912Maricaulis maris MCS10, complete genomeRelaxase/mobilization nuclease family protein9e-1582.4
NC_008781:2655071:2668994266899426709731980Polaromonas naphthalenivorans CJ2, complete genomeRelaxase/mobilization nuclease family protein5e-1376.6
NC_015221:12389:3025430254318881635Nitrosomonas sp. AL212 plasmid pNAL21202, complete sequencerelaxase/mobilization nuclease family protein9e-1272.4
NC_015259:485015:5274555274555290591605Polymorphum gilvum SL003B-26A1 chromosome, complete genomeRelaxase/mobilization nuclease family protein1e-0965.5
NC_016609:7427500:7445765744576574467901026Niastella koreensis GR20-10 chromosome, complete genomeRelaxase/mobilization nuclease family protein1e-0965.5
NC_012881:1802000:1828171182817118297871617Desulfovibrio salexigens DSM 2638, complete genomeRelaxase/mobilization nuclease family protein5e-0860.1
NC_015259:673662:6740956740956757861692Polymorphum gilvum SL003B-26A1 chromosome, complete genomeRelaxase/mobilization nuclease family protein1e-0758.9
NC_004663:1409462:141524214152421416192951Bacteroides thetaiotaomicron VPI-5482, complete genomemobilization protein BmgA5e-0756.6
NC_006139:31500:4405644056450601005Desulfotalea psychrophila LSv54 plasmid large, complete sequencerelated to TraI protein (partial length)1e-0655.8
NC_009615:3904962:393117639311763932096921Parabacteroides distasonis ATCC 8503 chromosome, complete genomemobilization protein BmgA5e-0653.5
NC_004459:349500:3598453598453613501506Vibrio vulnificus CMCP6 chromosome I, complete sequenceType IV secretory pathway, VirD2 component6e-0653.1
NC_009615:2590207:261980826198082620728921Parabacteroides distasonis ATCC 8503 chromosome, complete genomemobilization protein BmgA6e-0653.1
NC_016613:2103792:2118759211875921202641506Vibrio sp. EJY3 chromosome 1, complete sequencetype IV secretory pathway, VirD2 component6e-0653.1