Pre_GI: BLASTN Hits

Some Help

Query: NC_004631:531254 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 531254, End: 555151, Length: 23898

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_006511:529424*52942455225122828Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC030790BLASTN svgBLASTP svg
NC_003198:2453074*2453074247785124778Salmonella enterica subsp. enterica serovar Typhi str. CT18,030040BLASTN svgBLASTP svg
NC_011083:25428762542876256885525980Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,014750BLASTN svgBLASTP svg
NC_008563:25658762565876258822422349Escherichia coli APEC O1, complete genome01142BLASTN svgBLASTP svg
NC_007946:2593500*2593500261819924700Escherichia coli UTI89, complete genome01142BLASTN svgBLASTP svg
NC_013716:28984342898434291709918666Citrobacter rodentium ICC168, complete genome01039BLASTN svgBLASTP svg
NC_010473:2548946*2548946258173732792Escherichia coli str. K-12 substr. DH10B, complete genome0985BLASTN svgBLASTP svg
NC_000913:2455037*2455037248136126325Escherichia coli K12, complete genome0985BLASTN svgBLASTP svg
AC_000091:24624612462461248878526325Escherichia coli W3110 DNA, complete genome0985BLASTN svgBLASTP svg
CP002185:2608000*2608000263106823069Escherichia coli W, complete genome0977BLASTN svgBLASTP svg
CP002516:1475521*1475521149709321573Escherichia coli KO11, complete genome0977BLASTN svgBLASTP svg
NC_011748:2655989*2655989268823232244Escherichia coli 55989, complete genome0969BLASTN svgBLASTP svg
CU928145:2655989*2655989268823232244Escherichia coli 55989 chromosome, complete genome0969BLASTN svgBLASTP svg
NC_011083:40302240302245026847247Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,0825BLASTN svgBLASTP svg
NC_011149:58889558889560977120877Salmonella enterica subsp. enterica serovar Agona str. SL483,0682BLASTN svgBLASTP svg
NC_011080:61042861042863159921172Salmonella enterica subsp. enterica serovar Newport str. SL254,0674BLASTN svgBLASTP svg
NC_009648:18825001882500190677624277Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome0672BLASTN svgBLASTP svg
NC_010658:2529033*2529033255581226780Shigella boydii CDC 3083-94, complete genome0670BLASTN svgBLASTP svg
NC_007613:2376974*2376974240022423251Shigella boydii Sb227, complete genome0670BLASTN svgBLASTP svg
NC_002655:3260500*3260500328246521966Escherichia coli O157:H7 EDL933, complete genome0654BLASTN svgBLASTP svg
NC_002695:3189425*3189425321610426680Escherichia coli O157:H7 str. Sakai, complete genome0654BLASTN svgBLASTP svg
NC_009800:2505872*2505872252809922228Escherichia coli HS, complete genome0646BLASTN svgBLASTP svg
NC_011750:2585015*2585015261198826974Escherichia coli IAI39 chromosome, complete genome4e-175622BLASTN svgBLASTP svg
NC_006511:24677632467763249158023818Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC1e-162581BLASTN svgBLASTP svg
NC_003197:60604860604862559319546Salmonella typhimurium LT2, complete genome2e-155557BLASTN svgBLASTP svg
NC_008253:3122148*3122148315923237085Escherichia coli 536, complete genome2e-155557BLASTN svgBLASTP svg
NC_011083:654479*65447967531220834Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,2e-155557BLASTN svgBLASTP svg
NC_010102:24954412495441251396918529Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,4e-150539BLASTN svgBLASTP svg
NC_006905:65173265173267724625515Salmonella enterica subsp. enterica serovar Choleraesuis str4e-150539BLASTN svgBLASTP svg
NC_006511:2251022*2251022227421723196Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC4e-150539BLASTN svgBLASTP svg
NC_003198:598000*59800061851020511Salmonella enterica subsp. enterica serovar Typhi str. CT18,6e-143515BLASTN svgBLASTP svg
NC_004631:23663352366335238728320949Salmonella enterica subsp. enterica serovar Typhi Ty2, complete6e-143515BLASTN svgBLASTP svg
NC_015968:32772173277217329768120465Enterobacter asburiae LF7a chromosome, complete genome4e-135490BLASTN svgBLASTP svg
NC_015663:52532425253242527565022409Enterobacter aerogenes KCTC 2190 chromosome, complete genome3e-117430BLASTN svgBLASTP svg
NC_008563:33321143332114335140519292Escherichia coli APEC O1, complete genome1e-104389BLASTN svgBLASTP svg
NC_004631:10913031091303111095919657Salmonella enterica subsp. enterica serovar Typhi Ty2, complete1e-91345BLASTN svgBLASTP svg
NC_003198:18674561867456189339125936Salmonella enterica subsp. enterica serovar Typhi str. CT18,1e-91345BLASTN svgBLASTP svg
NC_011083:1993672*1993672201930525634Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,2e-90341BLASTN svgBLASTP svg
NC_011080:1944226*1944226198035236127Salmonella enterica subsp. enterica serovar Newport str. SL254,2e-90341BLASTN svgBLASTP svg
NC_003197:1945858*1945858197472828871Salmonella typhimurium LT2, complete genome2e-90341BLASTN svgBLASTP svg
NC_010102:11372471137247116298725741Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,1e-85325BLASTN svgBLASTP svg
NC_006511:10632491063249108659923351Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC5e-85323BLASTN svgBLASTP svg
NC_006905:1961774*1961774198409922326Salmonella enterica subsp. enterica serovar Choleraesuis str4e-79303BLASTN svgBLASTP svg
NC_015224:4386599*4386599441050923911Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,2e-69272BLASTN svgBLASTP svg
NC_015224:2095816*2095816211873722922Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,2e-69272BLASTN svgBLASTP svg
NC_015224:27019142701914272426222349Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,6e-69270BLASTN svgBLASTP svg
NC_015224:61080761080762877617970Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,1e-67266BLASTN svgBLASTP svg
NC_011149:44740124474012449847024459Salmonella enterica subsp. enterica serovar Agona str. SL483,2e-65258BLASTN svgBLASTP svg
NC_006905:4486433*4486433450919922767Salmonella enterica subsp. enterica serovar Choleraesuis str4e-64254BLASTN svgBLASTP svg
NC_011083:45478254547825460814560321Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,5e-57230BLASTN svgBLASTP svg
NC_010102:44778364477836450325125416Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,5e-57230BLASTN svgBLASTP svg
NC_015224:27903727903730366824632Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,5e-51210BLASTN svgBLASTP svg
NC_007606:4182188*4182188420162219435Shigella dysenteriae Sd197, complete genome8e-50206BLASTN svgBLASTP svg
NC_004431:32400032400034580421805Escherichia coli CFT073, complete genome3e-49204BLASTN svgBLASTP svg
NC_010067:51000510007450923510Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete3e-43184BLASTN svgBLASTP svg
NC_012214:35029923502992352409021099Erwinia pyrifoliae Ep1/96, complete genome1e-42182BLASTN svgBLASTP svg
NC_010634:20046532004653202887424222Yersinia pseudotuberculosis PB1/+, complete genome1e-36163BLASTN svgBLASTP svg
NC_006155:2461262*2461262248869127430Yersinia pseudotuberculosis IP 32953, complete genome1e-36163BLASTN svgBLASTP svg
NC_012912:22857782285778231059124814Dickeya zeae Ech1591, complete genome2e-35159BLASTN svgBLASTP svg
NC_012912:1701231*1701231174963148401Dickeya zeae Ech1591, complete genome6e-35157BLASTN svgBLASTP svg
NC_004851:19170919170922249930791Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence6e-35157BLASTN svgBLASTP svg
NC_004088:25410332541033256388322851Yersinia pestis KIM, complete genome3e-34155BLASTN svgBLASTP svg
NC_004088:29370772937077296291925843Yersinia pestis KIM, complete genome3e-34155BLASTN svgBLASTP svg
NC_005810:12309761230976125037019395Yersinia pestis biovar Microtus str. 91001, complete genome3e-34155BLASTN svgBLASTP svg
NC_005810:15200001520000154409924100Yersinia pestis biovar Microtus str. 91001, complete genome3e-34155BLASTN svgBLASTP svg
NC_005810:25086712508671253418625516Yersinia pestis biovar Microtus str. 91001, complete genome3e-34155BLASTN svgBLASTP svg
NC_005810:3021913*3021913304567123759Yersinia pestis biovar Microtus str. 91001, complete genome3e-34155BLASTN svgBLASTP svg
NC_005810:31423843142384317894536562Yersinia pestis biovar Microtus str. 91001, complete genome3e-34155BLASTN svgBLASTP svg
NC_005810:32727653272765329109918335Yersinia pestis biovar Microtus str. 91001, complete genome3e-34155BLASTN svgBLASTP svg
NC_004088:2366000*2366000239081024811Yersinia pestis KIM, complete genome3e-34155BLASTN svgBLASTP svg
NC_004088:22272782227278224825620979Yersinia pestis KIM, complete genome3e-34155BLASTN svgBLASTP svg
NC_004088:1909880*1909880193439224513Yersinia pestis KIM, complete genome3e-34155BLASTN svgBLASTP svg
NC_003134:64672646728918124510Yersinia pestis CO92 plasmid pMT1, complete sequence3e-34155BLASTN svgBLASTP svg
NC_003143:16910001691000171055719558Yersinia pestis CO92, complete genome3e-34155BLASTN svgBLASTP svg
NC_003143:2433190*2433190245920626017Yersinia pestis CO92, complete genome3e-34155BLASTN svgBLASTP svg
NC_003143:27414782741478276426222785Yersinia pestis CO92, complete genome3e-34155BLASTN svgBLASTP svg
NC_003143:31159333115933313845922527Yersinia pestis CO92, complete genome3e-34155BLASTN svgBLASTP svg
NC_003143:31912463191246321275521510Yersinia pestis CO92, complete genome3e-34155BLASTN svgBLASTP svg
NC_004088:12657301265730129020024471Yersinia pestis KIM, complete genome3e-34155BLASTN svgBLASTP svg
NC_004088:15104671510467153309222626Yersinia pestis KIM, complete genome3e-34155BLASTN svgBLASTP svg
NC_005810:3964468*3964468399026325796Yersinia pestis biovar Microtus str. 91001, complete genome3e-34155BLASTN svgBLASTP svg
NC_005810:44691564469156448873019575Yersinia pestis biovar Microtus str. 91001, complete genome3e-34155BLASTN svgBLASTP svg
NC_005815:611486114811099949852Yersinia pestis biovar Microtus str. 91001 plasmid pMT1, complete3e-34155BLASTN svgBLASTP svg
NC_010159:12880001288000132559537596Yersinia pestis Angola, complete genome3e-34155BLASTN svgBLASTP svg
NC_010159:138879*13887916617427296Yersinia pestis Angola, complete genome3e-34155BLASTN svgBLASTP svg
NC_010159:22523802252380227191719538Yersinia pestis Angola, complete genome3e-34155BLASTN svgBLASTP svg
NC_010159:24409472440947245913218186Yersinia pestis Angola, complete genome3e-34155BLASTN svgBLASTP svg
NC_010159:2546590*2546590256968123092Yersinia pestis Angola, complete genome3e-34155BLASTN svgBLASTP svg
NC_010159:30339893033989305747023482Yersinia pestis Angola, complete genome3e-34155BLASTN svgBLASTP svg
NC_010159:31692663169266318806418799Yersinia pestis Angola, complete genome3e-34155BLASTN svgBLASTP svg
NC_010159:409500*40950045168242183Yersinia pestis Angola, complete genome3e-34155BLASTN svgBLASTP svg
NC_008150:90500090500092909924100Yersinia pestis Antiqua, complete genome3e-34155BLASTN svgBLASTP svg
NC_008150:28226892822689284340720719Yersinia pestis Antiqua, complete genome3e-34155BLASTN svgBLASTP svg
NC_008150:25747942574794259632821535Yersinia pestis Antiqua, complete genome3e-34155BLASTN svgBLASTP svg
NC_008118:567775677710299946223Yersinia pestis Nepal516 plasmid pMT, complete sequence3e-34155BLASTN svgBLASTP svg
NC_008149:11226931122693115815435462Yersinia pestis Nepal516, complete genome3e-34155BLASTN svgBLASTP svg
NC_008149:11956141195614122004824435Yersinia pestis Nepal516, complete genome3e-34155BLASTN svgBLASTP svg
NC_008149:14403711440371146301222642Yersinia pestis Nepal516, complete genome3e-34155BLASTN svgBLASTP svg
NC_008149:1842500*1842500188064438145Yersinia pestis Nepal516, complete genome3e-34155BLASTN svgBLASTP svg
NC_008149:27731392773139279513521997Yersinia pestis Nepal516, complete genome3e-34155BLASTN svgBLASTP svg
NC_008150:1705152*1705152174460539454Yersinia pestis Antiqua, complete genome3e-34155BLASTN svgBLASTP svg
NC_008150:21737082173708219609922392Yersinia pestis Antiqua, complete genome3e-34155BLASTN svgBLASTP svg
NC_012214:53700053700055834721348Erwinia pyrifoliae Ep1/96, complete genome1e-33153BLASTN svgBLASTP svg
NC_012214:12126161212616123625023635Erwinia pyrifoliae Ep1/96, complete genome1e-33153BLASTN svgBLASTP svg
NC_014306:35249803524980358375158772Erwinia billingiae Eb661, complete genome4e-33151BLASTN svgBLASTP svg
NC_008120:62000620008949927500Yersinia pestis Antiqua plasmid pMT, complete sequence6e-32147BLASTN svgBLASTP svg
NC_010694:12508411250841127452923689Erwinia tasmaniensis, complete genome2e-31145BLASTN svgBLASTP svg
NC_012214:3931824*3931824395459922776Erwinia pyrifoliae Ep1/96, complete genome2e-31145BLASTN svgBLASTP svg
NC_015968:33019583301958333436632409Enterobacter asburiae LF7a chromosome, complete genome1e-30143BLASTN svgBLASTP svg
NC_012214:13555001355500137677021271Erwinia pyrifoliae Ep1/96, complete genome1e-30143BLASTN svgBLASTP svg
NC_004838:510135101310003049018Yersinia pestis KIM plasmid pMT-1, complete sequence2e-28135BLASTN svgBLASTP svg
NC_010158:928199281911499922181Yersinia pestis Angola plasmid pMT-pPCP, complete sequence2e-28135BLASTN svgBLASTP svg
NC_010159:17246917246919591323445Yersinia pestis Angola, complete genome2e-28135BLASTN svgBLASTP svg
NC_010159:29555622955562297845722896Yersinia pestis Angola, complete genome2e-28135BLASTN svgBLASTP svg
AP010958:2911741*2911741294759935859Escherichia coli O103:H2 str. 12009 DNA, complete genome9e-28133BLASTN svgBLASTP svg
NC_008149:2517538*2517538254015722620Yersinia pestis Nepal516, complete genome4e-27131BLASTN svgBLASTP svg
NC_005810:1663672*1663672168742323752Yersinia pestis biovar Microtus str. 91001, complete genome4e-27131BLASTN svgBLASTP svg
NC_004088:2691565*2691565271495023386Yersinia pestis KIM, complete genome4e-27131BLASTN svgBLASTP svg
NC_004431:4955658*4955658497950623849Escherichia coli CFT073, complete genome1e-26129BLASTN svgBLASTP svg
NC_011149:1236689*1236689125609919411Salmonella enterica subsp. enterica serovar Agona str. SL483,1e-26129BLASTN svgBLASTP svg
NC_012779:26648492664849268361918771Edwardsiella ictaluri 93-146, complete genome1e-26129BLASTN svgBLASTP svg
NC_012917:31980003198000322168023681Pectobacterium carotovorum subsp. carotovorum PC1, complete genome1e-26129BLASTN svgBLASTP svg
NC_013508:2587913*2587913262259934687Edwardsiella tarda EIB202, complete genome1e-26129BLASTN svgBLASTP svg
NC_020064:3998715*3998715409080492090Serratia marcescens FGI94, complete genome6e-26127BLASTN svgBLASTP svg
NC_013421:15453861545386156866923284Pectobacterium wasabiae WPP163, complete genome9e-25123BLASTN svgBLASTP svg
NC_014500:20191132019113204779528683Dickeya dadantii 3937 chromosome, complete genome4e-24121BLASTN svgBLASTP svg
NC_009348:2034500*2034500205759923100Aeromonas salmonicida subsp. salmonicida A449, complete genome4e-24121BLASTN svgBLASTP svg
NC_015061:12519051251905128092529021Rahnella sp. Y9602 chromosome, complete genome2e-22115BLASTN svgBLASTP svg
NC_015224:32917363291736331359921864Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,2e-1695.6BLASTN svgBLASTP svg
NC_012779:2281700*2281700230559923900Edwardsiella ictaluri 93-146, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_013508:16874321687432172109933668Edwardsiella tarda EIB202, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_009788:16360163603711520756Escherichia coli E24377A plasmid pETEC_73, complete sequence5e-1487.7BLASTN svgBLASTP svg
NC_021150:2348214*2348214238327335060Azotobacter vinelandii CA6, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_013851:24414072441407246552624120Allochromatium vinosum DSM 180 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_012560:2348202*2348202238326135060Azotobacter vinelandii DJ, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_008700:26075262607526263153824013Shewanella amazonensis SB2B, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_021150:3505234*3505234352968724454Azotobacter vinelandii CA6, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_012560:3505235*3505235352968824454Azotobacter vinelandii DJ, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_009785:1414892*1414892143928524394Streptococcus gordonii str. Challis substr. CH1, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_012779:261438*26143828632424887Edwardsiella ictaluri 93-146, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_021175:353292*35329237126317972Streptococcus oligofermentans AS 1.3089, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_012925:1357783*1357783138009922317Streptococcus suis P1/7, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_006905:40115440115443134930196Salmonella enterica subsp. enterica serovar Choleraesuis str7e-1073.8BLASTN svgBLASTP svg
NC_012779:20645822064582209112726546Edwardsiella ictaluri 93-146, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_008577:1690946*1690946171443823493Shewanella sp. ANA-3 chromosome 1, complete sequence3e-0971.9BLASTN svgBLASTP svg
NC_013416:15269201526920154563618717Aggregatibacter actinomycetemcomitans D11S-1, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_010334:32240093224009324417320165Shewanella halifaxensis HAW-EB4, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_008702:1094663*1094663111848823826Azoarcus sp. BH72, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_002655:16559441655944168171125768Escherichia coli O157:H7 EDL933, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_002695:15713891571389159815826770Escherichia coli O157:H7 str. Sakai, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_004337:3049118*3049118311609966982Shigella flexneri 2a str. 301, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_004741:3041294*3041294310468963396Shigella flexneri 2a str. 2457T, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_020260:603796*60379665197748182Cronobacter sakazakii Sp291, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014121:32359113235911326030624396Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete7e-0763.9BLASTN svgBLASTP svg
NC_007973:27734272773427279771424288Ralstonia metallidurans CH34 chromosome 1, complete sequence7e-0763.9BLASTN svgBLASTP svg
NC_014839:253961*25396131222658266Pantoea sp. At-9b plasmid pPAT9B02, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_011080:39419093941909396414422236Salmonella enterica subsp. enterica serovar Newport str. SL254,3e-0661.9BLASTN svgBLASTP svg
NC_009901:31489013148901317437325473Shewanella pealeana ATCC 700345, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008345:31999653199965322606326099Shewanella frigidimarina NCIMB 400, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_006905:39139883913988393189817911Salmonella enterica subsp. enterica serovar Choleraesuis str3e-0661.9BLASTN svgBLASTP svg