Query: NC_004631:4494000 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete
Start: 4494000, End: 4513808, Length: 19809
Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria
General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_003198:4513900* | 4513900 | 4545902 | 32003 | Salmonella enterica subsp. enterica serovar Typhi str. CT18, | 0 | 18800 | BLASTN svg | BLASTP svg |
NC_013716:3708415 | 3708415 | 3730778 | 22364 | Citrobacter rodentium ICC168, complete genome | 0 | 1066 | BLASTN svg | BLASTP svg |
NC_011080:4543000 | 4543000 | 4571790 | 28791 | Salmonella enterica subsp. enterica serovar Newport str. SL254, | 0 | 1011 | BLASTN svg | BLASTP svg |
NC_003197:4551880 | 4551880 | 4574498 | 22619 | Salmonella typhimurium LT2, complete genome | 0 | 987 | BLASTN svg | BLASTP svg |
NC_003198:4397074* | 4397074 | 4418617 | 21544 | Salmonella enterica subsp. enterica serovar Typhi str. CT18, | 0 | 948 | BLASTN svg | BLASTP svg |
NC_004631:4381724 | 4381724 | 4403267 | 21544 | Salmonella enterica subsp. enterica serovar Typhi Ty2, complete | 0 | 948 | BLASTN svg | BLASTP svg |
NC_012880:3982383* | 3982383 | 4012642 | 30260 | Dickeya dadantii Ech703, complete genome | 4e-125 | 456 | BLASTN svg | BLASTP svg |
NC_014500:564864 | 564864 | 591906 | 27043 | Dickeya dadantii 3937 chromosome, complete genome | 6e-112 | 412 | BLASTN svg | BLASTP svg |
NC_012912:4012112* | 4012112 | 4039071 | 26960 | Dickeya zeae Ech1591, complete genome | 3e-107 | 396 | BLASTN svg | BLASTP svg |
NC_004547:1062410* | 1062410 | 1081325 | 18916 | Erwinia carotovora subsp. atroseptica SCRI1043, complete genome | 6e-78 | 299 | BLASTN svg | BLASTP svg |
NC_013716:3327881 | 3327881 | 3364929 | 37049 | Citrobacter rodentium ICC168, complete genome | 7e-62 | 246 | BLASTN svg | BLASTP svg |
NC_011770:2046490* | 2046490 | 2070503 | 24014 | Pseudomonas aeruginosa LESB58, complete genome | 4e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_004757:2451919 | 2451919 | 2473411 | 21493 | Nitrosomonas europaea ATCC 19718, complete genome | 2e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_004113:1234048* | 1234048 | 1260286 | 26239 | Thermosynechococcus elongatus BP-1, complete genome | 2e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_008782:3167440 | 3167440 | 3222165 | 54726 | Acidovorax sp. JS42, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_004547:667988* | 667988 | 695973 | 27986 | Erwinia carotovora subsp. atroseptica SCRI1043, complete genome | 1e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_005966:69689 | 69689 | 91195 | 21507 | Acinetobacter sp. ADP1, complete genome | 1e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_011662:1211660 | 1211660 | 1236628 | 24969 | Thauera sp. MZ1T, complete genome | 1e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_012917:569856* | 569856 | 587784 | 17929 | Pectobacterium carotovorum subsp. carotovorum PC1, complete genome | 1e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_014931:5088125* | 5088125 | 5122721 | 34597 | Variovorax paradoxus EPS chromosome, complete genome | 1e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_012880:3529017* | 3529017 | 3565824 | 36808 | Dickeya dadantii Ech703, complete genome | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_012779:346998 | 346998 | 378719 | 31722 | Edwardsiella ictaluri 93-146, complete genome | 9e-06 | 60 | BLASTN svg | BLASTP svg |
NC_009801:2276131 | 2276131 | 2307531 | 31401 | Escherichia coli E24377A, complete genome | 9e-06 | 60 | BLASTN svg | BLASTP svg |