Pre_GI: BLASTN Hits

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Query: NC_004631:3910451 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 3910451, End: 3937051, Length: 26601

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003198:3924952*3924952395155226601Salmonella enterica subsp. enterica serovar Typhi str. CT18,024660BLASTN svgBLASTP svg
NC_011083:3915500*3915500393961024111Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,018470BLASTN svgBLASTP svg
NC_003197:3902500*3902500392838425885Salmonella typhimurium LT2, complete genome018430BLASTN svgBLASTP svg
NC_010102:38515003851500387645224953Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,018230BLASTN svgBLASTP svg
NC_006511:3690828*3690828371609925272Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC017960BLASTN svgBLASTP svg
NC_011080:3875320*3875320390054525226Salmonella enterica subsp. enterica serovar Newport str. SL254,017680BLASTN svgBLASTP svg
NC_011149:3822000*3822000384676224763Salmonella enterica subsp. enterica serovar Agona str. SL483,017620BLASTN svgBLASTP svg
NC_006905:3845000*3845000386969524696Salmonella enterica subsp. enterica serovar Choleraesuis str013720BLASTN svgBLASTP svg
NC_010067:38469623846962387119224231Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete09717BLASTN svgBLASTP svg
NC_009792:46589094658909468286123953Citrobacter koseri ATCC BAA-895, complete genome03935BLASTN svgBLASTP svg
NC_013716:44082014408201443527827078Citrobacter rodentium ICC168, complete genome03134BLASTN svgBLASTP svg
AP010958:4668181*4668181469259924419Escherichia coli O103:H2 str. 12009 DNA, complete genome02171BLASTN svgBLASTP svg
NC_011751:4251296*4251296427504623751Escherichia coli UMN026 chromosome, complete genome02155BLASTN svgBLASTP svg
CP002516:88500*8850011436625867Escherichia coli KO11, complete genome02155BLASTN svgBLASTP svg
CP002185:3998112*3998112402163723526Escherichia coli W, complete genome02155BLASTN svgBLASTP svg
CU928145:4167043*4167043419159624554Escherichia coli 55989 chromosome, complete genome02147BLASTN svgBLASTP svg
NC_010658:3774110*3774110379937225263Shigella boydii CDC 3083-94, complete genome02147BLASTN svgBLASTP svg
NC_011748:4167043*4167043419159624554Escherichia coli 55989, complete genome02147BLASTN svgBLASTP svg
NC_007613:3637832*3637832366214824317Shigella boydii Sb227, complete genome02139BLASTN svgBLASTP svg
NC_010473:3883701*3883701391159927899Escherichia coli str. K-12 substr. DH10B, complete genome02133BLASTN svgBLASTP svg
NC_000913:3786124*3786124381459928476Escherichia coli K12, complete genome02133BLASTN svgBLASTP svg
AC_000091:3827856*3827856385515527300Escherichia coli W3110 DNA, complete genome02133BLASTN svgBLASTP svg
CU928160:3862935*3862935388577322839Escherichia coli IAI1 chromosome, complete genome02117BLASTN svgBLASTP svg
NC_007606:3784847*3784847380859923753Shigella dysenteriae Sd197, complete genome02115BLASTN svgBLASTP svg
NC_002655:4606000*4606000462939223393Escherichia coli O157:H7 EDL933, complete genome02109BLASTN svgBLASTP svg
NC_002695:4537000*4537000455962722628Escherichia coli O157:H7 str. Sakai, complete genome02101BLASTN svgBLASTP svg
NC_004741:3992384*3992384401736124978Shigella flexneri 2a str. 2457T, complete genome02095BLASTN svgBLASTP svg
NC_004337:3761865*3761865378609924235Shigella flexneri 2a str. 301, complete genome02095BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome02095BLASTN svgBLASTP svg
NC_011750:4307166*4307166433102623861Escherichia coli IAI39 chromosome, complete genome02091BLASTN svgBLASTP svg
NC_008258:3995553*3995553402149425942Shigella flexneri 5 str. 8401, complete genome02087BLASTN svgBLASTP svg
NC_009801:4108179*4108179413170423526Escherichia coli E24377A, complete genome02077BLASTN svgBLASTP svg
NC_010498:4031500*4031500405311121612Escherichia coli SMS-3-5, complete genome02062BLASTN svgBLASTP svg
NC_008253:3896704*3896704392023823535Escherichia coli 536, complete genome02060BLASTN svgBLASTP svg
NC_007384:3956465*3956465398127224808Shigella sonnei Ss046, complete genome02060BLASTN svgBLASTP svg
NC_010468:80000*8000010593725938Escherichia coli ATCC 8739, complete genome02054BLASTN svgBLASTP svg
NC_009800:3821824*3821824384534923526Escherichia coli HS, complete genome02054BLASTN svgBLASTP svg
NC_007946:4050762*4050762407361822857Escherichia coli UTI89, complete genome02044BLASTN svgBLASTP svg
NC_004431:4223232*4223232424609922868Escherichia coli CFT073, complete genome02044BLASTN svgBLASTP svg
NC_008563:40835584083558410710723550Escherichia coli APEC O1, complete genome02036BLASTN svgBLASTP svg
NC_011740:4007000*4007000403180124802Escherichia fergusonii ATCC 35469, complete genome02010BLASTN svgBLASTP svg
NC_020063:974369743612048123046Enterobacteriaceae bacterium strain FGI 57, complete genome01818BLASTN svgBLASTP svg
NC_013850:109500*10950013209922600Klebsiella variicola At-22 chromosome, complete genome01031BLASTN svgBLASTP svg
NC_013421:4790696*4790696482022829533Pectobacterium wasabiae WPP163, complete genome2e-146527BLASTN svgBLASTP svg
NC_004547:164000*16400019143427435Erwinia carotovora subsp. atroseptica SCRI1043, complete genome3e-139504BLASTN svgBLASTP svg
NC_013961:73037*7303710749134455Erwinia amylovora, complete genome9e-124452BLASTN svgBLASTP svg
NC_003198:3042000*3042000306436622367Salmonella enterica subsp. enterica serovar Typhi str. CT18,2e-93351BLASTN svgBLASTP svg
NC_004631:3030580*3030580304986119282Salmonella enterica subsp. enterica serovar Typhi Ty2, complete2e-93351BLASTN svgBLASTP svg
NC_011083:3171171*3171171319192520755Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,9e-87329BLASTN svgBLASTP svg
NC_013508:63914639148559921686Edwardsiella tarda EIB202, complete genome2e-78301BLASTN svgBLASTP svg
NC_004460:16188921618892163876819877Vibrio vulnificus CMCP6 chromosome II, complete sequence2e-47198BLASTN svgBLASTP svg
NC_002506:82240182240184494222542Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete1e-45192BLASTN svgBLASTP svg
NC_005140:34000034000036232922330Vibrio vulnificus YJ016 chromosome II, complete sequence5e-45190BLASTN svgBLASTP svg
NC_009784:25385225385227160217751Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence1e-30143BLASTN svgBLASTP svg
NC_007712:38060003806000383079624797Sodalis glossinidius str. 'morsitans', complete genome7e-29137BLASTN svgBLASTP svg
NC_008577:49074974907497493408326587Shewanella sp. ANA-3 chromosome 1, complete sequence1e-27133BLASTN svgBLASTP svg
NC_003198:2453074*2453074247785124778Salmonella enterica subsp. enterica serovar Typhi str. CT18,1e-27133BLASTN svgBLASTP svg
NC_008321:46318664631866465846026595Shewanella sp. MR-4, complete genome6e-26127BLASTN svgBLASTP svg
NC_012913:2189862*2189862221535925498Aggregatibacter aphrophilus NJ8700, complete genome4e-21111BLASTN svgBLASTP svg
NC_011186:515214*51521454656031347Vibrio fischeri MJ11 chromosome II, complete sequence4e-21111BLASTN svgBLASTP svg
NC_014500:2479814*2479814250755827745Dickeya dadantii 3937 chromosome, complete genome2e-19105BLASTN svgBLASTP svg
NC_010694:63654*636548609922446Erwinia tasmaniensis, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_012962:44270004427000445406927070Photorhabdus asymbiotica, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_005126:5188976*5188976521454825573Photorhabdus luminescens subsp. laumondii TTO1, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_012968:381771*38177140409922329Methylotenera mobilis JLW8, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_007645:1336227*1336227136476028534Hahella chejuensis KCTC 2396, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_012962:10681021068102112169753596Photorhabdus asymbiotica, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_005126:15490661549066157724728182Photorhabdus luminescens subsp. laumondii TTO1, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_004547:2285092*2285092230801122920Erwinia carotovora subsp. atroseptica SCRI1043, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_005126:36304593630459368847858020Photorhabdus luminescens subsp. laumondii TTO1, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_007650:29017512901751292799926249Burkholderia thailandensis E264 chromosome II, complete sequence5e-1177.8BLASTN svgBLASTP svg
NC_012962:30600633060063308387423812Photorhabdus asymbiotica, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_012962:34999003499900355871558816Photorhabdus asymbiotica, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_012962:10415181041518106637824861Photorhabdus asymbiotica, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_012912:29985112998511302450925999Dickeya zeae Ech1591, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_005126:34853303485330350809922770Photorhabdus luminescens subsp. laumondii TTO1, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_005126:38120543812054388079068737Photorhabdus luminescens subsp. laumondii TTO1, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_005126:44239644423964444767223709Photorhabdus luminescens subsp. laumondii TTO1, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_005126:48575004857500488024422745Photorhabdus luminescens subsp. laumondii TTO1, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_012962:18270001827000184987822879Photorhabdus asymbiotica, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_012962:34636443463644349841134768Photorhabdus asymbiotica, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_012962:82090982090984059919691Photorhabdus asymbiotica, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_012962:86929586929589218422890Photorhabdus asymbiotica, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_015633:41358741358744184328257Vibrio anguillarum 775 chromosome chromosome I, complete sequence8e-1073.8BLASTN svgBLASTP svg
NC_012962:35680463568046362047652431Photorhabdus asymbiotica, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_012962:16616831661683171390552223Photorhabdus asymbiotica, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007912:4661141*4661141468409922959Saccharophagus degradans 2-40, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_003197:2894344*2894344294288048537Salmonella typhimurium LT2, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_005126:14250014250016059218093Photorhabdus luminescens subsp. laumondii TTO1, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_012962:26395002639500266574326244Photorhabdus asymbiotica, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_012962:39337153933715398542551711Photorhabdus asymbiotica, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015224:88953688953690956920034Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,1e-0869.9BLASTN svgBLASTP svg
CU928160:4248621*4248621427441825798Escherichia coli IAI1 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_010473:4256000*4256000427821222213Escherichia coli str. K-12 substr. DH10B, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_010473:62381062381065051726708Escherichia coli str. K-12 substr. DH10B, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_012962:11890211189021120825819238Photorhabdus asymbiotica, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_013592:2338403*2338403235809919697Dickeya dadantii Ech586, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_018419:1110000*1110000113209922100Secondary endosymbiont of Ctenarytaina eucalypti chromosome,5e-0867.9BLASTN svgBLASTP svg
NC_002505:23856923856927414635578Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete2e-0765.9BLASTN svgBLASTP svg
NC_005126:16138181613818165143837621Photorhabdus luminescens subsp. laumondii TTO1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_005126:89242289242291989627475Photorhabdus luminescens subsp. laumondii TTO1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008740:87611587611590015424040Marinobacter aquaeolei VT8, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010465:42909542909545249323399Yersinia pseudotuberculosis YPIII, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_012962:30307263030726305134020615Photorhabdus asymbiotica, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013421:13978411397841141728819448Pectobacterium wasabiae WPP163, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014228:33915003391500342834536846Xenorhabdus nematophila ATCC 19061, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014228:35343783534378355604421667Xenorhabdus nematophila ATCC 19061, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_012962:25877562587756263945151696Photorhabdus asymbiotica, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_012912:40718594071859411755145693Dickeya zeae Ech1591, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_007435:1825741*1825741184876423024Burkholderia pseudomallei 1710b chromosome II, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_006351:3159630*3159630318599926370Burkholderia pseudomallei K96243 chromosome 2, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_006349:2311817*2311817233999928183Burkholderia mallei ATCC 23344 chromosome 2, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_005126:43337674333767439509961333Photorhabdus luminescens subsp. laumondii TTO1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_005126:42105004210500424678336284Photorhabdus luminescens subsp. laumondii TTO1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008784:1151305*1151305117501923715Burkholderia mallei SAVP1 chromosome I, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_008835:14832371483237150346620230Burkholderia mallei NCTC 10229 chromosome I, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_009075:3113393*3113393313999926607Burkholderia pseudomallei 668 chromosome II, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_009078:3087759*3087759311399926241Burkholderia pseudomallei 1106a chromosome II, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_009079:2339756*2339756236599926244Burkholderia mallei NCTC 10247 chromosome I, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_011083:2847318*2847318291739170074Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,3e-0661.9BLASTN svgBLASTP svg
NC_012962:13646381364638138528120644Photorhabdus asymbiotica, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015666:1623790*1623790166298439195Halopiger xanaduensis SH-6 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_003198:3586000*3586000360812122122Salmonella enterica subsp. enterica serovar Typhi str. CT18,3e-0661.9BLASTN svgBLASTP svg